Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02021 ATGGGAAAGCATTGTTCAAATGATTCTAACACAGTCACAATCCTTTCAAAATTCACTGTTATCCCTCACCAAAAATCAACACTTGATAATCTCAAACTCTCAATCTCAGACCTAAACATGCTCTGTTGCCATTACATTCAAAAAGGCTGTCTCTTCACACCACCCTCTGAAAAACTCATTCCTCACCTTATTAATTCTCTCTCTAAAACCCTCTCAATCTTCCCCCCTCTCGCTGGCCGTTTCGTAACCGACTCCGATGGTTATATCTACATCACATGCAATGATGCCGGTGCCGAATTCATCCATGCAACCGCCACTCAATTCACCATCACCGACCTTTTATCACCACCTGATGTTCATCAAGCATTCAAACAATTCTTCCCTTTCCACCGAAAAATCAATCACACTGCTCATTTCTCACCGATTTTAGCTGTTCAAGTAACTTCCCTCGCCGATGGATTTTTCATCGGCGTCGCCGTCAGCCATGCTGTCACAGACGGTTCTACACTCTGGAATTTCTTCAATACGTTCGCTGATGTTTCCAGAGGAGTCACAGATATCCGTCGGCTCCCGGATTTCCGCCGGGAATCAATTCTGATGTCGAAAGTAGCTGTCGAGTTACCGGAAGGTGAAATCAAGGTATCATTCGACGCCGATGCGCCGTTACGGGAGAGAATTTTCAGTTTCACTCGAGAATCAATTCAGAAACTAAAAGATACAGTGAACTACCACCGTATTCCGCCGAGGGAAGATTGCGTGATTGAGATGATATCGAAGTTCAGAAACGATCCAATTGTTACGTTTCCGGTAACCGTCGAAACGACAGAAATTTCGTCGTTTCAGTCACTCTGCGCGCTGATGTGGCGATGCGTGACACGAGCTAGGAAACTTGAGGGTTCTAAAACGACGACGTTTAGAATGGCTGTGAATATTCGTAGCCGTTTGGAGCCAAAGTTACCACAGTATTATTTTGGGAATGCGATTCAAAGCATTGCCACGTATGCATCAGCGTGTGACGTGGTTGATAATGATCTTACGTGGTGTGCGGAGCAGCTGAATAAGAGTGTGAAAGAGTATGATAATGCTACGGTGAGGCGTGTCGCAGGAAATTGGGACCTTGAGCCGAAGTGTTTTCCGATGGGGAATCATGATGGTGGGACATTGCAGATGGGTAGTTCACATAGGTTTCCGATGTATGAGAATGATTTTGGATGGGGGCGACCGTTGGCGGTGAGGAGCGGTGGAGCTAATAAGTTTGACGGGAAGATGTCAGCATTTCCGGGAAGGAAAGGTGGTGGCGCTGTTGATTTGGAGGTGATTTTATCGCCTGAAACAATGGCACGACTTGAGACTGATTCTGAGTTTATGCTTTACGCTTCTTGTCAGCAGTGA 1392 0.4591 MGKHCSNDSNTVTILSKFTVIPHQKSTLDNLKLSISDLNMLCCHYIQKGCLFTPPSEKLIPHLINSLSKTLSIFPPLAGRFVTDSDGYIYITCNDAGAEFIHATATQFTITDLLSPPDVHQAFKQFFPFHRKINHTAHFSPILAVQVTSLADGFFIGVAVSHAVTDGSTLWNFFNTFADVSRGVTDIRRLPDFRRESILMSKVAVELPEGEIKVSFDADAPLRERIFSFTRESIQKLKDTVNYHRIPPREDCVIEMISKFRNDPIVTFPVTVETTEISSFQSLCALMWRCVTRARKLEGSKTTTFRMAVNIRSRLEPKLPQYYFGNAIQSIATYASACDVVDNDLTWCAEQLNKSVKEYDNATVRRVAGNWDLEPKCFPMGNHDGGTLQMGSSHRFPMYENDFGWGRPLAVRSGGANKFDGKMSAFPGRKGGGAVDLEVILSPETMARLETDSEFMLYASCQQ 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02021 463 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 14 456 - -
Trre5g02021 463 Pfam Transferase family 11 456 - -
Trre5g02021 463 Gene3D - 10 209 IPR023213 -
Trre5g02021 463 Gene3D - 210 451 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02021 Trre-Chr5 15055523 15056914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02021 66 450 Monolignol Biosynthesis Gene Families AT5G48930 28.049 9.25e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02021 - - cam:101506439 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02021 5 15055523 15056914 Trre5g02021 5 15055523 15056914 ECH
Trre5g02021 5 15055523 15056914 Trre9g04322 9 51060540 51062018 ECH
Trre9g04322 9 51060540 51062018 Trre5g02021 5 15055523 15056914 PCT