Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02013 ATGGCAAAGAAGCGGCAACCAACCACCACCGCCACGGGCAAAGATGACCAACCACTCACCCCCGCCTCAAAGAACGACCAACCACCACCTTCCAAAAAGCCAGAAGAAGAAAAAGTAGAAGAAAAAGAGGACGAAGAGGTAACATCGGAAGAAGCTTCATCATCTGAAGGCGAAGAAGAAGATGATGATGATGATGAAGAAGACGATGATGAAGAACAAACACCTTCTTCCAAAACCGTTCCACCTGCAAAATCCGAATCGAAAAAAGATGAAGTCAACGAAGACGAAGAAGAAACCGATACTGATTCTGATTCTGAACAAGAACCACCTCCCAAACTCAAATCCATCAATTCAAAATCGATCGATGAAACCCTAAAATCAAAGCCTCAACCAAAATCCTCCGCTGCACCGGCCAGATCTGGAACCAAACGTTCTGCCGACGATGACACCAAACAATCAAAGAAGAAGAAAACAATCGCCGCCGCTGCTGCTGATGATGAGAAAGTGAAGGAGGTGGATAACAAGAAGTCCGGTGACGATTCGAAAAAATTGTTTGTGAGAGTTTTCAACGAAGATGATGAACTCGCAATTCTCAAAGGTTTTTTGGATTTCACTGAGAAAACAGGGACGGATCCACTCAAATATCCCACAGCTTTTTACAATGATGTGAAAACTTCGATTCATTTTCCAGTTACACTCGATCAACTGAAAGATAAGGTTCGGAGGCTGAAGTTGAAATTCGAGAATAAGATGAAAAGTTGTAAGAATGGAAAAACTCCTAATTTTTCCAAACCTATTGAGGAGAAAATGTTTGAATTTGGCAAAAAGATTTGGGGTGGTACAATTGTTGAAGAAAATGGTAAACCTAATTTGAAACCCTCTAAGAAGAAACTTGCTGTTAAGAAATCACCAACAACCAAAGTGATGGAACCTGATTTGCCTTTGATGGTTTGGAAGGAAACTAGTAAGGTGGGAAGTAGTGTTGGAAAGGAGAATCCTGATTTGAGTTTAATGTTGAACGAAATGGAACAATTCGACAGGAGTGTAACCACTGTTTTTGGGTCGGGTACGGATTTGCTTAAGAGCGGAGTGGAGTTGATTGAGGAATCAAAGAGGGTGGAGTTGGAAAGAAGGTGGAACGAGTTGCGAGTTACTGAATTGAAGTTGGTTGAGATGCGAGCTGCGTTGGTTGAGGATCAAGCTAGCTGGATATTGGATGCGATGAATTCACTGAACTCTCTCCCTCTCTCATCTCAATCTGCGCTTCTTCAAACCCTAACCCCAACCTTGCCGCCCCCGTTTTTCTCGATCTCGCCCTCTACCTTTCTTTGTCTTTCGATTCGTTTTGTCGATTCGTCTTCTTCACCCATTCGTTCAAGTGAAGTGTTTTCAAGCACAGCTGCTGTGGATTTTACACCACATGCCCCATGTGGTCACAGTTTATACAGGAGAGGTAGCTTTAAGTTTCACCATTTTGGAAGGATCAACAAACTACCTCCACTATCATTTAGAAGATTTTTTAATTTAATTTTGGATGATTGTAATTTTTTAATTTAA 1557 0.4175 MAKKRQPTTTATGKDDQPLTPASKNDQPPPSKKPEEEKVEEKEDEEVTSEEASSSEGEEEDDDDDEEDDDEEQTPSSKTVPPAKSESKKDEVNEDEEETDTDSDSEQEPPPKLKSINSKSIDETLKSKPQPKSSAAPARSGTKRSADDDTKQSKKKKTIAAAAADDEKVKEVDNKKSGDDSKKLFVRVFNEDDELAILKGFLDFTEKTGTDPLKYPTAFYNDVKTSIHFPVTLDQLKDKVRRLKLKFENKMKSCKNGKTPNFSKPIEEKMFEFGKKIWGGTIVEENGKPNLKPSKKKLAVKKSPTTKVMEPDLPLMVWKETSKVGSSVGKENPDLSLMLNEMEQFDRSVTTVFGSGTDLLKSGVELIEESKRVELERRWNELRVTELKLVEMRAALVEDQASWILDAMNSLNSLPLSSQSALLQTLTPTLPPPFFSISPSTFLCLSIRFVDSSSSPIRSSEVFSSTAAVDFTPHAPCGHSLYRRGSFKFHHFGRINKLPPLSFRRFFNLILDDCNFLI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02013 518 PANTHER BNAANNG10740D PROTEIN-RELATED 48 405 IPR007592 GO:0006355
Trre5g02013 518 MobiDBLite consensus disorder prediction 142 178 - -
Trre5g02013 518 Pfam Protein of unknown function, DUF573 185 279 IPR007592 GO:0006355
Trre5g02013 518 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g02013 518 MobiDBLite consensus disorder prediction 40 73 - -
Trre5g02013 518 MobiDBLite consensus disorder prediction 1 178 - -
Trre5g02013 518 MobiDBLite consensus disorder prediction 110 140 - -
Trre5g02013 518 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02013 Trre-Chr5 14989273 14997301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02013 112 410 GeBP Transcription Factor Family AT4G25210 32.911 5.61e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre5g02013 DUF573 1.6e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02013 - - tpra:123884521 434.106