Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02011 ATGAGGAAAGTAGTACATTGGACAAATGACGAACACATGCGTTTCTTGAAGGGTCTTTTACATGGCTATAAGGGAAATTGGAAAGATATCTCCCAAAAATACGTAGTGACAAAGACTCCAACCCAAGTGGCAAGCCATGCTCAAAAGTATTATAAAAGGCAAGAGCAAATATTTGATGATAAGAGCAAAGATATTAAAAGGAAACCTAGAACAAGCATCCATGATACGACGACTATTGATTTCAGGGCCGTAGATGGGCCAGGGCAGGCAGGGCCCAAGCCCAGGGCCTCAAAAAAAATGGGGCCTCAAATTTTTTAA 318 0.4151 MRKVVHWTNDEHMRFLKGLLHGYKGNWKDISQKYVVTKTPTQVASHAQKYYKRQEQIFDDKSKDIKRKPRTSIHDTTTIDFRAVDGPGQAGPKPRASKKMGPQIF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02011 105 ProSiteProfiles SANT domain profile. 1 55 IPR017884 -
Trre5g02011 105 NCBIfam myb-like DNA-binding domain, SHAQKYF class 4 54 IPR006447 GO:0003677
Trre5g02011 105 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Trre5g02011 105 PANTHER TRANSCRIPTION FACTOR KUA1 2 84 - -
Trre5g02011 105 MobiDBLite consensus disorder prediction 82 105 - -
Trre5g02011 105 Gene3D - 5 57 - -
Trre5g02011 105 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Trre5g02011 105 SMART sant 3 53 IPR001005 -
Trre5g02011 105 Pfam Myb-like DNA-binding domain 6 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02011 Trre-Chr5 14972919 14973420 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g02011 Myb_DNA-binding 5.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02011 - - mtr:11423031 117.472