Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01976 ATGCCTCCTCCTTCAGATATCAATCATCTTTCTCACCCTTGCATATATGGTGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATTGGGTCAAATAGAGGAAGGGGTGGTGGTCATCATCTTCAACAACCTATAGACGAAAACATGTCTTGGCGAGCTCCGCCTAGATCCTTGGATACCCGTGGTAGATCTAAGAAGGAGGAAGAGGATTTGAACAATGCAATTGCACTTTCTTTAAGTGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTGATGATAATTACGCAAAGGCGCTTCAAGATCGCACACACTCATCTCTACACCCTCCATATGCCCCTTTACCGTTTTATCCCCGGGGATACAGTATGCCATCACACGTCAGAATATGTGGAGGGTGCAACAAGGAGATACACTATGGTAATTGTTTGGGAGTTGAAAATAGTTATTTTCATCCAGACTGCTTTCGGTGTCATTCTTGTCATCATCCTATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTATTGTTTTAAAGAATTGAGCCATCCTAAATGTGAAGTTTGTCGTCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGTGTCATCCCTATTGGAACCAAAAGTATTGTCCATCTCACGAATACGATAATACAGCTCGCTGTTGTAGCTGTGAAAGATTAGAGTCCCGGGGCGAACGGTACTTTAGATTAGATGATGGACGGATTTTGTGCTTCGAGTGCATGGAATCTGCTATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTAGAGACTATTATGAAGGAATGAATATGAGAATCGATCAACAAATCCCTATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAGAAGAATGGTTTCCATCACTTGCCAGAAACAAGAGGCTTATGTCTTTCAGAAGAGCAGACCGTCACCAGCGTACATAGATGGTCAAACATTGGGGGCCATCGATTAATAGGGATGCGAAGTCAACCACAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTCGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCACGGTTGGTTACGCCTCAAAGGTTACCGCAACCTTGATCCTGCAGTCGAGGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCAGAAGTCATGTCAGGTTCTAGAACCATGCCATCAACATCAGCGGCTTCTTCCTCATCCTCGTCCTCCTCTTCCTATTCATCAAAGAAAGGTGTGAAATCCAAAGCTGAGAATAAACTTGGCGAATTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGATCAGCTAATGCAGCTGTTAATAAATACGGTTTACGCAGTACTCTCGACCATATTCGTTTGACTGGTCAATTCCCACTGTAA 1536 0.4245 MPPPSDINHLSHPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGRGGGHHLQQPIDENMSWRAPPRSLDTRGRSKKEEEDLNNAIALSLSEDLKIPAGYRWRTGADDNYAKALQDRTHSSLHPPYAPLPFYPRGYSMPSHVRICGGCNKEIHYGNCLGVENSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCRHYIPINGSGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWSNIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTMPSTSAASSSSSSSSSYSSKKGVKSKAENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRSTLDHIRLTGQFPL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01976 511 Gene3D Cysteine Rich Protein 136 203 - -
Trre5g01976 511 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Trre5g01976 511 PANTHER PROTEIN DA1-RELATED 2 33 510 IPR045218 -
Trre5g01976 511 Pfam LIM domain 145 198 IPR001781 -
Trre5g01976 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Trre5g01976 511 CDD LIM_DA1 145 197 - -
Trre5g01976 511 Pfam Protein DA1 294 506 IPR022087 -
Trre5g01976 511 SMART lim_4 144 196 IPR001781 -
Trre5g01976 511 MobiDBLite consensus disorder prediction 433 455 - -
Trre5g01976 511 CDD LIM 172 227 - -
Trre5g01976 511 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Trre5g01976 511 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01976 Trre-Chr5 14667373 14671073 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g01976 DA1-like 2.8e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01976 - - gmx:100798829 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01976 5 14667373 14671073 Trre5g01976 5 14667373 14671073 ECH