Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01944 ATGAGTACACATAATATGTTGGGCATTGTTTTAAATGATATACTTCGGACGATCACACCCTCACAAGAAGATTGGGAGATACGGCTTGCAATTATCAATGATTTGCGAAGCACTGCTGAATCTGTGGAAAGCCTGAGAGGAGCAATTGTTGAACCATTTGGGTCATTTGTATCTAATCTCTTCACGCGATGGGGTGACTTGGATATTTCAATTGAGTTATTGAATGGTTCCCACATTGGATCTGCTGGGAGAAAACAAAAACAAACATTGCTGGTGAATTTTCTACAAGCTTTGAGAATGAGAGGTGGATGCATGAACTTCCAGCTCATCCCAAATGCAAGAGTGCCCATTTTAAAATTTAAAAGTGTCCGACAAGGCATATCTTGTGATGTTTCAATCAATAACCTGCCGGGGCTGATGAAATCTAAATTTTTGCTTTGGATCAACAAGATAGATGGCCGCTTTCATGATCTGGTTTTAGTGGTTAAGCAATGGGCCAAAGCTCATAAAATCAATAACTCTAAGACTGGAAGTTTCAACTCCTTTACGCTCAGTTTACTTGTAATCTTTCACTTGCAGACATGTGCTCCGGCAATTTTACCACCACTGAAAGATATATACCCTACCAATATGGTTGATGAGCTGAGAGGTGTTAGAGCTGATGCAGAGAATCTTATCGCACAAACCTGTGAAGCTAACATAAACAGGTTCATATCAAAGTCGAGGCCAATTAACAGAAAATCTTTACCAGAACTTTTTGTTGATTTCCTAATAAAGTTTGCTCAGATAGATTCATGGGCCGCAGAGATCGGAATTTGCACTTATACTGGAGAATGGGAACAGATAAAAAACAACATGAGATGGTTGCCCAAGACTAGTGCAATATTGGTTGAGGATCCTTTTAAGCAGCCGGAAAATTCAGCAATATCTGTCAGCTCAGGACAACTGAAAAAGATAGCCGAAGCATTTCTAAAGACATACAGCTTACTTACATCACAAAATCAGAACCAAAGCTCTCTTCTGACCCAGTTAGCACCACCATATGTGTCGAGACTTATTGCCAGACCTGTCATTCCAAATTATAATGTCAGGCCTGCCATTCCAAATTACCTTGGTGGTTACTCTCTTCCAACTCAGCCACAGCCACAGGTGCACAGGGGTGTACCCCCACACCCAAGGTCACGGCAACGTTCTCAAAATGGCAAGCAAGGTGCAAGCTCTAACGGTTCCACTTCAAAGCAAGGAGCATACTCCAATGGTTCAACTTCGAAGCAAGGACCAAGCTCCAATGGTTCAACTTCAAAGCAAGGACCAAGCTCCAATGGTACAACTTCAAAGGGAGGTGCAAACTCCAATGGCTTAACGTCAAAGCAAGAAGCAAGCTTCAACTGGACCTTGGCCAACCAGCCAAATTTCAGAAAGGTATTAGGCCAGGTTAAGCAGACCGAAGCTATGCCACCTATTCCATCTGCAAAGAAGCCTACCCAACCTAAGGCACCCAAGCCCAAACCCAAGAATCCTCTTGATCTACTTCCTCCAAGCAAGATGGTATTGGATGACTGGAAAAGACTCTACTCTAACACTAAGACTAACTTCCGTGAGGTTGCAGTCAAAGGATTCTGGGACATGTATGATCCAGAGGGATATTCTCTCTGGTTCTGTGACTACAAATACAATGATGAGAACATGGTTTCTTTCGTGACACTGAACAAGGTTGGAGGATTTTTTCAGAGGATGGATCTTGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAGGTGAAGGGATTGTGGCTCTTCCGTGGACTAGAGATTCCAAAGTTTGTCATGGATGAATGCTATGATATGGAGCTGTATGAGTGGACCAAGGTTGACATCTCCGACGAAGCTCAAAAAGAGCGTGCCAGTCAGATGATTGAAGATGCTGAACCATTTGAGGGTGAGGCTCTTTTGGATGCCAAGTGCTTTAAGTGA 1995 0.4286 MSTHNMLGIVLNDILRTITPSQEDWEIRLAIINDLRSTAESVESLRGAIVEPFGSFVSNLFTRWGDLDISIELLNGSHIGSAGRKQKQTLLVNFLQALRMRGGCMNFQLIPNARVPILKFKSVRQGISCDVSINNLPGLMKSKFLLWINKIDGRFHDLVLVVKQWAKAHKINNSKTGSFNSFTLSLLVIFHLQTCAPAILPPLKDIYPTNMVDELRGVRADAENLIAQTCEANINRFISKSRPINRKSLPELFVDFLIKFAQIDSWAAEIGICTYTGEWEQIKNNMRWLPKTSAILVEDPFKQPENSAISVSSGQLKKIAEAFLKTYSLLTSQNQNQSSLLTQLAPPYVSRLIARPVIPNYNVRPAIPNYLGGYSLPTQPQPQVHRGVPPHPRSRQRSQNGKQGASSNGSTSKQGAYSNGSTSKQGPSSNGSTSKQGPSSNGTTSKGGANSNGLTSKQEASFNWTLANQPNFRKVLGQVKQTEAMPPIPSAKKPTQPKAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAVKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFFQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGLEIPKFVMDECYDMELYEWTKVDISDEAQKERASQMIEDAEPFEGEALLDAKCFK 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01944 664 MobiDBLite consensus disorder prediction 485 512 - -
Trre5g01944 664 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 461 664 IPR044628 GO:0004364
Trre5g01944 664 SUPERFAMILY eEF1-gamma domain 504 664 IPR036433 GO:0003746|GO:0006414
Trre5g01944 664 CDD NT_PAP_TUTase 27 148 - -
Trre5g01944 664 MobiDBLite consensus disorder prediction 393 455 - -
Trre5g01944 664 FunFam Elongation factor 1-gamma 1 504 664 - -
Trre5g01944 664 SMART EF1G_2 503 611 IPR001662 GO:0003746|GO:0006414
Trre5g01944 664 MobiDBLite consensus disorder prediction 490 509 - -
Trre5g01944 664 MobiDBLite consensus disorder prediction 374 455 - -
Trre5g01944 664 Gene3D - 152 327 - -
Trre5g01944 664 Gene3D Beta Polymerase, domain 2 31 151 IPR043519 -
Trre5g01944 664 SUPERFAMILY Nucleotidyltransferase 5 147 IPR043519 -
Trre5g01944 664 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 504 664 IPR001662 GO:0003746|GO:0006414
Trre5g01944 664 SUPERFAMILY PAP/OAS1 substrate-binding domain 154 336 - -
Trre5g01944 664 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 504 664 IPR036433 GO:0003746|GO:0006414
Trre5g01944 664 Pfam Elongation factor 1 gamma, conserved domain 503 610 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01944 Trre-Chr5 14483964 14489777 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01944 462 664 Eukaryotic Initiation Factors Gene Family AT1G57720 76.549 9.57e-121 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01944 - - gmx:100791794 559.296