Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01941 ATGGCTGGAATGTGCTGTGGTGTTGTTGGTGAAGGAGAATCTCCCGCGAGTTCACGTCCATCCAGACGCCGGAATTTAGACTTACTACCTTTCAAATACATCGCCGACATGGCGTCTGGAACTTCACGGAAACGCCGTCAACCGGATCTTTGTAAGAACAACGATTTTGAAAGCTGTGATGACTCAAGCGACGACAAAAGTAAAAAGAGCAAAAATGAATCCAAAGTAACCGATTCTGAAGATAAACTTTCAACAGAAGGTAATTCTGAAGATGGAGAGTTTCCAAAGTTTGGTGTTACTTCAGTTTGTGGTAGAAGAAGAGACATGGAAGATTCCGTTTCGGTTAAACCTTCTTTCTCTTCGCAAGAACCTTTTCACTACTTTGGTGTTTTTGACGGTCACGGTTGCTCTCACGTTGCAACTATGTGTAAGGAGAGACTTCACGAAATTGTGAAGGAAGAAATCAACGAATCACAAGAGAATTTCGAGTGGAGTATCACTATGCAACAAGGATTCGCTCGCATGGATGATGAAGTTCAGAGATGGAATAGTAGCAACCAAACCGTTACTTGCAGATGCGAGCTACAAACTCCTCACTGCGACGCCGTCGGATCCACCGCCGTCGTAGCTGTTGTAACACCAGACAAAATAATCGTCTCAAACTGCGGTGACTCCCGCGCTGTTCTTTGCCGTAACGGCGTCGCCATCCCACTCTCCTCCGATCACAAACCGGATCGACCCGACGAGTTGCTCCGTGTTCAAGCAGCAGGAGGGCGCGTGATCTACTGGGATGGTCCAAGAGTGCTTGGTGTACTCGCCATGTCTAGAGCAATAGGCGACAACTATTTAAAGCCATATGTGATATCAGAACCCGAGGTAACGGTAACGGAGAGAAAAGACGAAGATGAGTGTTTGATACTAGCGAGTGATGGATTATGGGATGTTGTTTCAAACGACACCGCATGTGGTGTTGTTAGGATGTGTTTAAAGGCACAGAAGCTGCCGTCGCCGCCGGGTTCTCCCGGTAACAACGACGTGACGACAGATGGTTCCGATCGGGCATGTTCTGATGCGTCAATTTTGTTGACTAAGTTGGCTTTAGCAAGACATAGTTCGGATAATGTTAGTGTGGTGGTGATTGATTTAAGGAGAGATCAACGACAATTATCAAATTCCAACAATAATTAA 1188 0.4604 MAGMCCGVVGEGESPASSRPSRRRNLDLLPFKYIADMASGTSRKRRQPDLCKNNDFESCDDSSDDKSKKSKNESKVTDSEDKLSTEGNSEDGEFPKFGVTSVCGRRRDMEDSVSVKPSFSSQEPFHYFGVFDGHGCSHVATMCKERLHEIVKEEINESQENFEWSITMQQGFARMDDEVQRWNSSNQTVTCRCELQTPHCDAVGSTAVVAVVTPDKIIVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERKDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKLPSPPGSPGNNDVTTDGSDRACSDASILLTKLALARHSSDNVSVVVIDLRRDQRQLSNSNNN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01941 395 CDD PP2Cc 96 382 IPR001932 -
Trre5g01941 395 SUPERFAMILY PP2C-like 95 383 IPR036457 -
Trre5g01941 395 SMART PP2C_4 86 380 IPR001932 -
Trre5g01941 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Trre5g01941 395 ProSiteProfiles PPM-type phosphatase domain profile. 96 382 IPR001932 -
Trre5g01941 395 PANTHER PROTEIN PHOSPHATASE 72 382 IPR015655 GO:0004722|GO:0006470
Trre5g01941 395 Gene3D - 91 391 IPR036457 -
Trre5g01941 395 FunFam Protein phosphatase 2C 37 91 389 - -
Trre5g01941 395 MobiDBLite consensus disorder prediction 42 89 - -
Trre5g01941 395 Pfam Protein phosphatase 2C 97 374 IPR001932 -
Trre5g01941 395 MobiDBLite consensus disorder prediction 37 93 - -
Trre5g01941 395 MobiDBLite consensus disorder prediction 1 25 - -
Trre5g01941 395 SMART PP2C_SIG_2 108 382 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01941 Trre-Chr5 14453332 14454834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01941 42 384 PP2C-type Phosphatase Gene Family AT2G29380 60.340 2.16e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01941 K14497 - gmx:100776356 580.096