Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01935 ATGGAAGCTATTTTCATTGAGATCCCTCATGGAGAAGATATTGTGGAGCATATCCGCGGGTATGGATATTTTTGTCATCCCTATGCACAACACCGCGAAGCCAACATAACAGTGTTGAGTGCTTCCGGACTTGTCTCTAATGTTACCCTCCATTCCTCAAATCTCCCGATAGAAGGACCAGTCTATATGACATCTCTATCGGGAATATTCATCGCTGACCTACCACATTCTTCATTTTCGATTTGCTTCTCTAACAATGATGGCCAGTTGTTTGGAGGAATTGTTGGAGGACCAATTATTGCTGCTGATGTTATTTACGTTAAAGCTGTTATTTTCAATGAATTTGATGTTGTGGATACAATTCAGAGTGATAGCGATAGTGATAGCAACTAG 393 0.4071 MEAIFIEIPHGEDIVEHIRGYGYFCHPYAQHREANITVLSASGLVSNVTLHSSNLPIEGPVYMTSLSGIFIADLPHSSFSICFSNNDGQLFGGIVGGPIIAADVIYVKAVIFNEFDVVDTIQSDSDSDSN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01935 130 CDD DUF296 4 101 IPR005175 -
Trre5g01935 130 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 117 - -
Trre5g01935 130 ProSiteProfiles PPC domain profile profile. 1 130 IPR005175 -
Trre5g01935 130 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 114 IPR014476 GO:0003680
Trre5g01935 130 Pfam Plants and Prokaryotes Conserved (PCC) domain 4 112 IPR005175 -
Trre5g01935 130 Gene3D - 2 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01935 Trre-Chr5 14399688 14400688 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01935 1 113 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.812 8.51e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01935 - - tpra:123913361 122.864