Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01930 ATGGAAGTTATTCTCATTGAGATCCCTCATGGAGAAGATATTGTGGAGCGTATAATTCAATATGCACAGCACCGCGAAGCCAACATAACAGTGTTGAATGCTTCCGGTCCTGTCTCAGGTGTTACCCTCCATTCCCCAAATCTCCCGATAGAAGGACCAGTCTATATGACAAATCTATCAGGAACATATATAAATTCCAATTTTGATGATGTTCCCCCACGATTCATCGCTGACCTACCACATTCTTCATTTTCGATTTGCTTCTCTAACAATGATGGGCAGGTGTTTGGAGGAATTGTTGGAGGACCAATTATTGCTGCTGATGTTATTTACGTTAAGGCTGCTATTTTCAATGAATTTGACGTTGTGGATACAATTGACATTGATAGCGAGGGTGATAGCAACTAG 408 0.4118 MEVILIEIPHGEDIVERIIQYAQHREANITVLNASGPVSGVTLHSPNLPIEGPVYMTNLSGTYINSNFDDVPPRFIADLPHSSFSICFSNNDGQVFGGIVGGPIIAADVIYVKAAIFNEFDVVDTIDIDSEGDSN 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01930 135 Gene3D - 1 131 - -
Trre5g01930 135 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 118 IPR005175 -
Trre5g01930 135 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 122 - -
Trre5g01930 135 ProSiteProfiles PPC domain profile profile. 1 135 IPR005175 -
Trre5g01930 135 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 119 IPR014476 GO:0003680
Trre5g01930 135 CDD DUF296 3 106 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01930 Trre-Chr5 14380228 14380635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01930 1 118 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.058 2.40e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01930 - - tpra:123913361 164.466