Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01921 ATGGAGGAATCTCAAAATTTGATGTGGTTGAAAAGGAAACAAGTCTTGAACTCACATATTGAAGCAGTACCATCATTTGAAGTTGGAGCTATGAACAACAATAAATCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGAATACTTGGTGGATGTATATGGCCTCCAAGATCTTACTCATGTCACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCTAAGCTCAAACAAAGTCTTGGTCACCATAATGAATTAGACCTTCATTCTTTTCATCAAAATCATTTTACAACAAGCAGAGTTAATTCATCTTCTTGGCCCTCAACTATATCAACACAAGAAAACTGTTTTGAGCCAAACATGTCTTCATATTCTTCTTCAATTAGATGGGGGAATAACCACATGGTGGTGTCTCATGATTCTGAACCAAAAGAGCTATTAGTTAATGCAAGGGAACAAATTTTCAAAGGTTATGGTTGCAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGGCCAAAAATTACTAACTGATGATTTTTGTGGGGACAAAGGCAACACTTATAAAAAACCAAGGACAACTTCTATTTTTCACAAGCCATGTTTGAATGATAGATGTTTAACTTTTCAGTCTGCAGAGTTTGTGATTGGAATTAAGCCTGGAATGGAAGACTTGGATCTTGAACTCAGACTAGGGAAATTAACACAGAAAGTTTAG 774 0.3553 MEESQNLMWLKRKQVLNSHIEAVPSFEVGAMNNNKSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRAKLKQSLGHHNELDLHSFHQNHFTTSRVNSSSWPSTISTQENCFEPNMSSYSSSIRWGNNHMVVSHDSEPKELLVNAREQIFKGYGCNDYVETSLSMGQNNSMFGQKLLTDDFCGDKGNTYKKPRTTSIFHKPCLNDRCLTFQSAEFVIGIKPGMEDLDLELRLGKLTQKV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01921 257 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Trre5g01921 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Trre5g01921 257 Pfam C2H2-type zinc finger 60 84 - -
Trre5g01921 257 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Trre5g01921 257 PANTHER OS07G0101800 PROTEIN 32 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01921 Trre-Chr5 14316980 14317919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01921 32 92 C2H2 Transcription Factor Family AT2G37740 72.131 2.34e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g01921 zf-C2H2_6 4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01921 - - gmx:100788082 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01921 5 14316980 14317919 Trre9g04232 9 50100710 50101456 PCT