Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01917 ATGGCTAATCGTTGGTGGACTGATAATGTGGCAATGAGTCAGAGAGAATCATCAATGCCTTCATCACCATCATCACTTCAACATCTCAAAAGAGAACAAGAAAACAACAACAACAACTCAACTCCAACTAATAGCAGTAGCAACAACAACAACGAGGAAGAAGATAACAACAACAACAATGAAGAACAAAACCCATCTGAGCCAGGAAGTAGTAGCGGTGGTCGGAGGCCACGTGGCAGACCACCAGGTTCTAAGAACAAACCAAAACCGCCTATTGTTATAACAAAAGAATCACCCAACGCGCTTCGAAGCCACGTGTTGGAAATCAGTAGTGGAAGTGATGTGGCGGAGAGTATAGCAACTTTTGCTAACCGACGACACCGTGGTGTGTCGGTTTTAAGTGGGAGTGGCATTGTTGCTAATGTGACGCTTAGACAACCTGCTGCTCCTGGTGGTGTTATTACTCTTCATGGAAGATTCGAGATACTTTCGCTTTCGGGGGCTTTTTTGCCTTCGCCTTCTCTGGCTGGTGCTACTGGATTGACTGTTTATTTAGCTGGTGGTCAGGGGCAGGTTGTTGGTGGTGCTGTCGCTGGTTCTTTGGTTGCTTCTGGACCTGTGATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGCTACCATTGGAAGATGAACAAGGTGGTGGTGAACAAGAGGAAATGCAAGTTCAACAGCAGCAACAACAACAGCAACAATCTGGTGTGAATTCAGCAACTGTTGCAGTTACTTCTTCTCAAGGTTTGGAATTAGGTGAACATCAACAACAGGTTTCAATGCCTATGTATAATTTGCCACCAAATTTGATGCATAATGGTACTCAAATGTCTCATGATGTGTTTTGGGGTCCTCCACCTCCTCGTCCTCCTCCTCCTTCTTTCTGA 927 0.4498 MANRWWTDNVAMSQRESSMPSSPSSLQHLKREQENNNNNSTPTNSSSNNNNEEEDNNNNNEEQNPSEPGSSSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSLAGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATYERLPLEDEQGGGEQEEMQVQQQQQQQQQSGVNSATVAVTSSQGLELGEHQQQVSMPMYNLPPNLMHNGTQMSHDVFWGPPPPRPPPPSF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01917 308 MobiDBLite consensus disorder prediction 276 308 - -
Trre5g01917 308 MobiDBLite consensus disorder prediction 233 256 - -
Trre5g01917 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 227 - -
Trre5g01917 308 FunFam AT-hook motif nuclear-localized protein 102 229 - -
Trre5g01917 308 CDD DUF296 103 174 IPR005175 -
Trre5g01917 308 MobiDBLite consensus disorder prediction 1 54 - -
Trre5g01917 308 Gene3D - 102 246 - -
Trre5g01917 308 Coils Coil 44 64 - -
Trre5g01917 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 297 IPR014476 GO:0003680
Trre5g01917 308 MobiDBLite consensus disorder prediction 226 256 - -
Trre5g01917 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 215 IPR005175 -
Trre5g01917 308 ProSiteProfiles PPC domain profile profile. 99 237 IPR005175 -
Trre5g01917 308 PIRSF ESCAROLA 12 308 IPR014476 GO:0003680
Trre5g01917 308 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01917 Trre-Chr5 14274814 14275740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01917 1 305 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.211 1.14e-82 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01917 - - gmx:100791954 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01917 5 14274814 14275740 Trre5g01917 5 14274814 14275740 ECH