Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01915 ATGGTCATGGCAAAAACACCCCTACTTTTTCTCTGCATATTCATCCTTCTAGCCTCAAACTCAATAATACAATCTCATTCTCAACAAGATGAGTTTTTCTTTTCTGGATTCAATGAAGCTGCTACAAACATAACCTTAAACGGAGGTGCAATAATTCAACACAAAGGAACAATTCGTTTAACAAATGACACTGAAAGAGTACTTGGTCATGCTTTTTATTCAAATCCAATCCAATTCAAAAACTCCAACAACTCAAACAAAGTTTTCTCTTTTTCAACTTCTTTTGCTTTTGCAATTATCCCTCAATATCCAAAACTAGGAGGCCATGGATTTGCCTTCACCATTTCACCTTCCAAAAAACTCTCCAATGGTTATCCAAGTCAGTACTTAGGCCTTCTCAACCCACATGATTTAGGAAACTTCTCAAACCATCTATTCGCAGTCGAATTCGACACAGTTCAAGATTTCGAATTCAATGACATCAATGACAATCATGTTGGTATAAACCTTAACAACATGGTATCAAACAAATCAGTAAAAGCATGTTTTTTTACTGATGGGTCAGTTCAAGATCTCAATTTGAAGAGTGGTAATGTGATTCAAGCATGGATTGATTACAATTCTTCAATGAATCATCTTGAAGTTAGACTTTCACCAACTTCATCAAAACCAAGTTCACCAATCTTATCATACAAAGTAGATCTAACACCAATTCTTCAAGAAACTATGTATATTGGGTTTTCTTCTTCAACAGGGTTACTCTCTAGCTCACACTATATACTAGGTTGGAGCTTCAAAATCAATGGAGAATCCAAAACACTGTCTTTGAAACATCTTCCTTCACTCTCTTCACATGCAAATAACAGTAAAAAGTCCTTAATCTTAGGTCTCTCTATTTCATTTCTGATTCTAATAGCTTTAGCAATTGGTTTTGCTTTATACATAAAGATGAAAAACCATGATGTTATAGAAGCTTGGGAACTTGAAGTAGGACCACATAGATTCCCTTACAAAGAACTGAAGCAAGCAACAAAAGGGTTCAAGGAAAAAAACCTTCTTGGATTTGGAGGTTTTGGTAAAGTTTACAAAGGTGTGTTAGTGTCATCAAATTCCAAAACTGAAATAGCTGTGAAACAAATCTCTCATGAATCAAAACAAGGGTTGCAAGAGTTCATATCAGAAATAGAAACAATAGGAAAACTTCGTCATAGGAATCTAGTACAGTTACTAGGTTGGTGTCGGAAGAAAAACGATTTAATCTTAGTGTATGATTATATGGAAAATGGAAGTTTAGATAAATATATATTTGAAAAACCAAGAAGAATATTGAAATGGGAAGAAAGGTTTAGGATCATAAAAGGTGTAGCTTGTGGGTTAGTTTATCTGCATGAAGAATGGGAACAGACTGTGATACATAGAGATGTTAAAGCTGGGAATGTTCTTTTGGATTCTGATATGAATGCAAAGTTAGGTGATTTTGGTTTGGCTAAGCTTTATGATCATGGTGAGAATCCAAGTACAACAAGGGTGGTTGGAACTATGGGGTATTTAGCACCAGAGTTAACAAGAACAGGTAAACCAACTACAAGTTCTGATGTTTTTGCATTTGGGGCATTGTTGTTGGAGGTTGTTTGTGGAAGGAGGCCTATTGAGGCGAAAGCGTTGCCGGAGGAGCTTGTTTTGGTGGATTGGGTTTGGGATAGGTGTAGAGTAGGGGAAGTTATGGAGGTTGTGGATAAAAAGTTAGGTGGTGTTTACGATGAGGTGGAGGTTTTGTTGGTGGTTAAGGTGGGTTTGATGTGTTCTGATGAGTTACCGGGGAGGAGGCCGACGATGAGGCAGGTGGTTAGGTATTTGGAAGGAGAGGTGAAGTTGCCGGAGATTGATGGGTTTGGGGGAAAAAAGGAGGGTTATTTGTATCGGAGATCGGAGTTTTTTGAAAGGGAGAATACTTGGTCGTCAGCAGGTGATGACGTGGAGAGTACGTTTGCATCGTCTCTTCAACTTTCCGGTGGCCGGTAG 2022 0.3783 MVMAKTPLLFLCIFILLASNSIIQSHSQQDEFFFSGFNEAATNITLNGGAIIQHKGTIRLTNDTERVLGHAFYSNPIQFKNSNNSNKVFSFSTSFAFAIIPQYPKLGGHGFAFTISPSKKLSNGYPSQYLGLLNPHDLGNFSNHLFAVEFDTVQDFEFNDINDNHVGINLNNMVSNKSVKACFFTDGSVQDLNLKSGNVIQAWIDYNSSMNHLEVRLSPTSSKPSSPILSYKVDLTPILQETMYIGFSSSTGLLSSSHYILGWSFKINGESKTLSLKHLPSLSSHANNSKKSLILGLSISFLILIALAIGFALYIKMKNHDVIEAWELEVGPHRFPYKELKQATKGFKEKNLLGFGGFGKVYKGVLVSSNSKTEIAVKQISHESKQGLQEFISEIETIGKLRHRNLVQLLGWCRKKNDLILVYDYMENGSLDKYIFEKPRRILKWEERFRIIKGVACGLVYLHEEWEQTVIHRDVKAGNVLLDSDMNAKLGDFGLAKLYDHGENPSTTRVVGTMGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEAKALPEELVLVDWVWDRCRVGEVMEVVDKKLGGVYDEVEVLLVVKVGLMCSDELPGRRPTMRQVVRYLEGEVKLPEIDGFGGKKEGYLYRRSEFFERENTWSSAGDDVESTFASSLQLSGGR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01915 673 ProSitePatterns Protein kinases ATP-binding region signature. 353 378 IPR017441 GO:0005524
Trre5g01915 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre5g01915 673 Pfam Protein tyrosine and serine/threonine kinase 350 618 IPR001245 GO:0004672|GO:0006468
Trre5g01915 673 CDD lectin_legume_LecRK_Arcelin_ConA 31 269 IPR001220 GO:0030246
Trre5g01915 673 SUPERFAMILY Protein kinase-like (PK-like) 321 619 IPR011009 -
Trre5g01915 673 PANTHER - 43 626 - -
Trre5g01915 673 CDD STKc_IRAK 353 621 - -
Trre5g01915 673 ProSiteProfiles Protein kinase domain profile. 347 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01915 673 Gene3D Transferase(Phosphotransferase) domain 1 426 631 - -
Trre5g01915 673 Gene3D - 29 268 - -
Trre5g01915 673 FunFam Lectin-domain containing receptor kinase A4.3 332 425 - -
Trre5g01915 673 Pfam Legume lectin domain 30 278 IPR001220 GO:0030246
Trre5g01915 673 FunFam L-type lectin-domain containing receptor kinase S.4 28 273 - -
Trre5g01915 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 282 IPR013320 -
Trre5g01915 673 SMART serkin_6 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01915 673 FunFam L-type lectin-domain containing receptor kinase S.4 426 630 - -
Trre5g01915 673 Gene3D Phosphorylase Kinase; domain 1 332 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01915 Trre-Chr5 14256340 14258361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01915 31 628 Receptor kinase-like Gene Family AT3G55550 59.571 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre5g01915 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01915 - - gmx:100787552 887.486