Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01912 ATGTCTACAGATACAACAACGACGACGTCGTATTGGTGTTACAGATGCAGTCGTTTTGTAAGGTTAGCGACACAAGAAACGGTTATTTGTCCCGATTGCGACGGTGGTTTTCTCGAACAAATCGAACAACCGTCACGTTCCCTTCAAATTGATGCTCGCCGGAGACGTTTTCCGGCTGCAGCTATGTACATGATCGGTCAACGTTCCGGTTCAGATCATACTTCTCGACCAACTTCTATCAGAAGAACTCGTCGTAACGGTGGTGAACGGTCTCCTTTCAATCCGGTTATAGTACTCCGTGGCGGTGGAGCAACGGAGGTTACAGAAGCCGGTGGTGCTACTGCTAACAACGGAGCTGGTGGAGAGAGTCGTGGATTTGAACTTTTCTATGATGATGGTGCTGGTTCTGGTTTAAGACCTTTACCTCCAAGTATGTCAGAGTTTCTTCTTGGATCTGGATTTGATAGATTGTTAGAACAGCTTTCTCAGATTGAAATTAATGGAATTTCGAGATTCGAACATCCACCGGCGTCTAAAGCTGCAGTTGATTCATTACCAACTATTGAAATTGATAATAATTATTTGGAAATGGAACCACACTGTGCAGTTTGTATGGAAGCTTTTGAATTAGCTAGTAATCAACCACAATTACAGACACAGTCGCAGTCACAGTCACAATCGCTTGGTTTGAATGAAGAAGATAGTAATGTTGGGTTGACTATTTGGAGATTGCCGGGTGGTGGTTTTGCTGTGGGGAGATTTTCGGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTTGTTTATACCGAAATGGATGGAGGTTTTAATAATGGTGGTGAACCTAGAAGGATTTCTTGGTCTTCAAGAGGGGGTAGAGGGAGGGAGAGAAGTGGCGGTTTGAGAAGGTTTTTCGGGAGTTTCTTTGGTTGTTTTAGTAGTGGTGGAGTTGGGAATCAGCGTACAGTTTCGAGTAGAGAGTCGAGATCAGTGAGGACTAATTCGTCTCATTCTTCAAATATGGATCCATCTCCGCGTTCGCGAAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCATGGTGCACAATGCAACAATTGTGA 1107 0.4463 MSTDTTTTTSYWCYRCSRFVRLATQETVICPDCDGGFLEQIEQPSRSLQIDARRRRFPAAAMYMIGQRSGSDHTSRPTSIRRTRRNGGERSPFNPVIVLRGGGATEVTEAGGATANNGAGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRFEHPPASKAAVDSLPTIEIDNNYLEMEPHCAVCMEAFELASNQPQLQTQSQSQSQSLGLNEEDSNVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGGRGRERSGGLRRFFGSFFGCFSSGGVGNQRTVSSRESRSVRTNSSHSSNMDPSPRSRRTWSMDVNSGMRSWCTMQQL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01912 368 MobiDBLite consensus disorder prediction 318 353 - -
Trre5g01912 368 Pfam zinc-ribbon 9 41 IPR039525 GO:0061630
Trre5g01912 368 Pfam Protein of unknown function (DUF1117) 237 339 IPR010543 -
Trre5g01912 368 MobiDBLite consensus disorder prediction 67 95 - -
Trre5g01912 368 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01912 Trre-Chr5 14243526 14244853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01912 140 217 C3H Transcription Factor Family AT5G01980 35.897 7.39e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01912 K11982 - gmx:100807324 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01912 5 14243526 14244853 Trre9g04709 9 53893970 53902219 ECH
Trre5g01912 5 14243526 14244853 Trre5g01912 5 14243526 14244853 ECH