Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g01909 | ATGAGTTTTGTTTTTCGAGGAGCAAGAGCTGATTTAGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGCGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAACTCACTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTAGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCAACATGTCAACAACTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGTCACACAGAACTACGGTTGCATATGCCTCCATCGATAGCACTGGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCGGATAATGTTTCTACTGCACCTTCGATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTGCCCAAAAAAGTGGTCCCTCAGTGCAACAAGCATCACCGTCCACTTCTGCTGAGCAGAAGACACAGGATAATTCAAAGGTGGTTGGAAACACGAAAGCCTCCGATGACGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCTAATTGTATTGATCCCTGGCTACGGCAACAAGGGACATGCCCTGTCTGCAAATTTCGAGCAGGATCTGGATGGAATGACAGTGGACATCATGATATCGCAGACATGGTTTGA | 825 | 0.4618 | MSFVFRGARADLENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGAQKSGPSVQQASPSTSAEQKTQDNSKVVGNTKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDSGHHDIADMV | 274 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g01909 | 274 | PANTHER | TARGET OF ERK KINASE MPK-1 | 2 | 260 | - | - | |
Trre5g01909 | 274 | CDD | RING-H2_PA-TM-RING | 213 | 255 | - | - | |
Trre5g01909 | 274 | Pfam | Ring finger domain | 213 | 255 | IPR001841 | - | |
Trre5g01909 | 274 | SMART | ring_2 | 214 | 254 | IPR001841 | - | |
Trre5g01909 | 274 | MobiDBLite | consensus disorder prediction | 176 | 204 | - | - | |
Trre5g01909 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 255 | IPR001841 | - | |
Trre5g01909 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 260 | IPR013083 | - | |
Trre5g01909 | 274 | MobiDBLite | consensus disorder prediction | 173 | 204 | - | - | |
Trre5g01909 | 274 | SUPERFAMILY | RING/U-box | 207 | 258 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g01909 | Trre-Chr5 | 14207541 | 14210836 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g01909 | 1 | 274 | C3H Transcription Factor Family | AT3G55530 | 76.173 | 1.06e-141 | 397 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g01909 | K16283 | - | gmx:100777936 | 449.129 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre5g01909 | 5 | 14207541 | 14210836 | Trre5g01909 | 5 | 14207541 | 14210836 | ECH |