Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01909 ATGAGTTTTGTTTTTCGAGGAGCAAGAGCTGATTTAGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGCGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAACTCACTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTAGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCAACATGTCAACAACTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGTCACACAGAACTACGGTTGCATATGCCTCCATCGATAGCACTGGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCGGATAATGTTTCTACTGCACCTTCGATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTGCCCAAAAAAGTGGTCCCTCAGTGCAACAAGCATCACCGTCCACTTCTGCTGAGCAGAAGACACAGGATAATTCAAAGGTGGTTGGAAACACGAAAGCCTCCGATGACGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCTAATTGTATTGATCCCTGGCTACGGCAACAAGGGACATGCCCTGTCTGCAAATTTCGAGCAGGATCTGGATGGAATGACAGTGGACATCATGATATCGCAGACATGGTTTGA 825 0.4618 MSFVFRGARADLENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGAQKSGPSVQQASPSTSAEQKTQDNSKVVGNTKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDSGHHDIADMV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01909 274 PANTHER TARGET OF ERK KINASE MPK-1 2 260 - -
Trre5g01909 274 CDD RING-H2_PA-TM-RING 213 255 - -
Trre5g01909 274 Pfam Ring finger domain 213 255 IPR001841 -
Trre5g01909 274 SMART ring_2 214 254 IPR001841 -
Trre5g01909 274 MobiDBLite consensus disorder prediction 176 204 - -
Trre5g01909 274 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Trre5g01909 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 260 IPR013083 -
Trre5g01909 274 MobiDBLite consensus disorder prediction 173 204 - -
Trre5g01909 274 SUPERFAMILY RING/U-box 207 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01909 Trre-Chr5 14207541 14210836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01909 1 274 C3H Transcription Factor Family AT3G55530 76.173 1.06e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01909 K16283 - gmx:100777936 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01909 5 14207541 14210836 Trre5g01909 5 14207541 14210836 ECH