Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01908 ATGAGTTTTGTTTTTCGAGGAGCAAGAGCTGATTTAGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGCGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAACTCACTCACTTTTCTCGTAACAGTTCTCCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTAGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCAACATGTCAACAACTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGTCACACAGAACTACGGTTGCATATGCCTCCATCGATAGCACTGGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTGGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCGGATAATGTTTCTACTGCACCTTCGATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTGCCCAAAAAAGTGGTCCCTCAGTGCAACAAGCATCACCGTCCACTTCTGCTGAGAAGACACAGGATAATTCAAAGGTGGTTGGAAACACGAAAGCCTCCGATGACGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGAGATGTACTTCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCTAATTGTATTGATCCCTGGCTACGGCAACAAGGGACATGCCCTGTCTGCAAATTTCGAGCAGGATCTGGATGGAATGACAGTGGACATCATGATATCGCAGACATGGTTTGA 822 0.4611 MSFVFRGARADLENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGAQKSGPSVQQASPSTSAEKTQDNSKVVGNTKASDDELTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDSGHHDIADMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01908 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Trre5g01908 273 PANTHER TARGET OF ERK KINASE MPK-1 2 259 - -
Trre5g01908 273 SMART ring_2 213 253 IPR001841 -
Trre5g01908 273 CDD RING-H2_PA-TM-RING 212 254 - -
Trre5g01908 273 MobiDBLite consensus disorder prediction 176 203 - -
Trre5g01908 273 Pfam Ring finger domain 212 254 IPR001841 -
Trre5g01908 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Trre5g01908 273 MobiDBLite consensus disorder prediction 173 203 - -
Trre5g01908 273 SUPERFAMILY RING/U-box 207 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01908 Trre-Chr5 14207541 14210836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01908 1 273 C3H Transcription Factor Family AT3G55530 77.174 2.65e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01908 K16283 - gmx:100777936 452.981