Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01892 ATGGCAGCTAGAGTGAGGGTTTCTTTACTGGTCCTCGTGAGCCTTGTCGCTTACATGTCTAGCACTGCAGAATCTTCAATAACCCCAGCAGAGTTCATCATCAAGTCTTCGTGCAGGGCTACTCGCTACCCTATTTTGTGTGTCCGATGTCTCATGGGGTATGCGAGAGTGATTGGCCTAAGTGAGCGACAACTAGCCATGACTGCTATATCAGTGAGCATATCCAGGACACGATCGAGTGCATCATTTGTGAAGAAGATATCAAAAGCAAGAGGCATCAAACCAAGGGAGTACAGTGCCATACAGGACTGCATAGAAAACATGGGCGACAGTTTGGACAGTCTTAATCAATCGGTTAGGGAGTTAGGCAGTATTGGTCATGCTGTTGGAGAGGATTTCGTGTGGCGCATGAGCAACGTGCAAACTTGGGTCAGTGCTGCCCTTACTGATGATAACACCTGTCTTGATGGCTTTGCTGGTCCTTCCATGAATGGAAATGTCAAGGCTGCCATCAAGAACAGAATTGTCAATCTTACTCAAGTTACCAGCAACGCACTCGCTTTGGTCAATCGCTTCGCCTCAAGCCATCAAACTGCTGAAACTCCTTAA 609 0.4729 MAARVRVSLLVLVSLVAYMSSTAESSITPAEFIIKSSCRATRYPILCVRCLMGYARVIGLSERQLAMTAISVSISRTRSSASFVKKISKARGIKPREYSAIQDCIENMGDSLDSLNQSVRELGSIGHAVGEDFVWRMSNVQTWVSAALTDDNTCLDGFAGPSMNGNVKAAIKNRIVNLTQVTSNALALVNRFASSHQTAETP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01892 202 CDD PMEI-like_3 36 194 - -
Trre5g01892 202 NCBIfam pectinesterase inhibitor domain 9 190 IPR006501 GO:0004857
Trre5g01892 202 SMART PMEI_2 29 188 IPR006501 GO:0004857
Trre5g01892 202 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 188 - -
Trre5g01892 202 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 192 IPR035513 -
Trre5g01892 202 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 192 IPR035513 -
Trre5g01892 202 FunFam Pectin methylesterase inhibitor 1 28 192 - -
Trre5g01892 202 Pfam Plant invertase/pectin methylesterase inhibitor 34 188 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01892 Trre-Chr5 14041437 14042045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01892 33 189 Carbohydrate Esterase AT3G14310 29.747 2.36e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01892 - - mtr:11427094 315.464