Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01890 ATGGATATTTCTGACAACAACTTCAACTTCCTGTATCCGGCTGGATATAACTTCAAACCCACCGATCAAGAGATTATTGAGCACTACCTTAAGAATAAAGTCGCCGGTGGAAAGATGGATATTGATTTGCTAGAAGTTGATCTCAACGAAACCGAGCCTTGGAATATACCAGAATTATGCAAAATTAATGGTTATAGACAAATAGCATGGTATTTCTTGGGTCGAAAAGAAAAGTTTTGGGTTAGGAATCATACAAATAGAGCTACAAAAGCAGGATACTGGAAAGCAGGAACCGACAGTCCAATGTGCTATGTGAATGACCCTAATAGTTTCGTTGCAATGAAAAAGACTCTAGCCTTTTTTCAAGGAAAGGAACCTAATGGACTATTAACTGAATGGGTCATGTATGAGTACCGCTTAGAAACTAATGAAGCTGAAAGTAACACTCTTCAGACTCAGAAACCAACATTGCGAACACTGCAATTGTGCGAGAATCAAATGAATCAATTGCTTTATGGCAGCAATGGTTTACCAGGTCCAGCAGCAGCAGTGGAGGAGAGCAATCAAAGGATTGGCCGGTACTAG 585 0.4 MDISDNNFNFLYPAGYNFKPTDQEIIEHYLKNKVAGGKMDIDLLEVDLNETEPWNIPELCKINGYRQIAWYFLGRKEKFWVRNHTNRATKAGYWKAGTDSPMCYVNDPNSFVAMKKTLAFFQGKEPNGLLTEWVMYEYRLETNEAESNTLQTQKPTLRTLQLCENQMNQLLYGSNGLPGPAAAVEESNQRIGRY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01890 194 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Trre5g01890 194 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Trre5g01890 194 SUPERFAMILY NAC domain 11 153 IPR036093 GO:0003677|GO:0006355
Trre5g01890 194 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 146 - -
Trre5g01890 194 ProSiteProfiles NAC domain profile. 12 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01890 Trre-Chr5 14038340 14039717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01890 6 144 NAC Transcription Factor Family AT1G12260 44.681 1.32e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g01890 NAM 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01890 - - tpra:123909901 211.846