Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01889 ATGAAAATGAATAGAAGGTCGGAACTTGAAGATGCCGCCACACTCTTTTCACCAAAGGGGTTTTGCTTTGATCTGAAACCAGAGCTGCGCCTTTTTCCATCCAAAGTCATGGCTTTGACCCTTCACGCTAATCCGGGAAACAAAAATGCTTACAAGACACTGATTCCCGCTGAATATGTCGGTGTCCAAGTTCAACAGGTTCCAGATTTTCAGATGGGTGTCTCCAACAAAACTCCTCAATTTCTCAAGATGAACCCTATTGGAAAGGTTCCTGTCTTGGAAACTCCTGATGGTCCCATCTTTGAGAGCAATGCCATTGCTCGTTATGTTGCCCGATTGGGTGAGAACAATTTGTTTGGATCATCTCCCATTGATCAGGCTTACATTGACCAGTGGATTGATTTCTTTTCTTTGGAGATTGATGACAATATTATGAAGTTATACCGCCCAAGACGTGGATTTTCCCCTTACTTTCCTCCAGTAGAGGAGGCTGCAATCTCTGCATTGAAGAGAGCATTTGAGGCTTTGAACACTCACCTTGCCCACAATACTTACCTAGTTGGGCATTCTGTTACCCTTGCTGACATTATAGCAACAAACAACTTGTATTTGGGTTTCACTTATCTCTTCGTCAAGAGCTTCACATCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCTTGGTCAACCAGCCAAATTTCAGAAAGATACTAGGTCAGGTTAAGCAGACCGAAGCTATGCCACCTATTCCATCTGCAAAGAAGCCTACCCAACCTAAGGAATCTAAGCCCAAATCTAAAGAAGAACCAAAGAAAGCGGCTAAAGGAGAGACTGAAAAGCCCAAAGAAGAAGCTGAAGAGGAGGCACCCAAGCCCAAACCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGGTATTGGATGACTGGAAAAGACTCTACTCCAACACCAAGACTAACTTCCGTGAGGTTGCAGTCAAAGGATTCTGGGACATGTATGATCCAGAGGGATATTCGCTCTGGTTCTGTGACTACAAATACAATGACGAGAACACGGTTTCTTTCGTGACACTGAACAAGGTTGGAGGATTTCTTCAGAGGATGGATCTTGCTCGCAAGTATGCATTCGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAGGTGAAGGGATTGTGGCTTTTCCGTGGACAAGAGATTCCAAAATTTGTCATGGATGAATGCTATGATATGGAGCTGTACGAGTGGACCAAGGTTGACATCTCCGACGAAGCTCAAAAGGAGCGTGCCAGTCAGATGATTGAAGATGCTGAACCATTTGAGGGTGAGGCTCTTTTGGATGCCAAGTGCTTCAAGTGA 1365 0.444 MKMNRRSELEDAATLFSPKGFCFDLKPELRLFPSKVMALTLHANPGNKNAYKTLIPAEYVGVQVQQVPDFQMGVSNKTPQFLKMNPIGKVPVLETPDGPIFESNAIARYVARLGENNLFGSSPIDQAYIDQWIDFFSLEIDDNIMKLYRPRRGFSPYFPPVEEAAISALKRAFEALNTHLAHNTYLVGHSVTLADIIATNNLYLGFTYLFVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAMPPIPSAKKPTQPKESKPKSKEEPKKAAKGETEKPKEEAEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAVKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVMDECYDMELYEWTKVDISDEAQKERASQMIEDAEPFEGEALLDAKCFK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01889 454 FunFam Elongation factor 1 gamma 115 250 - -
Trre5g01889 454 CDD GST_C_EF1Bgamma_like 125 247 - -
Trre5g01889 454 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 37 118 IPR004045 -
Trre5g01889 454 FunFam Elongation factor 1B gamma 37 110 - -
Trre5g01889 454 Gene3D Glutaredoxin 35 110 - -
Trre5g01889 454 MobiDBLite consensus disorder prediction 258 294 - -
Trre5g01889 454 SUPERFAMILY Thioredoxin-like 32 113 IPR036249 -
Trre5g01889 454 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 294 454 IPR001662 GO:0003746|GO:0006414
Trre5g01889 454 SFLD Glutathione Transferase (cytosolic) 39 225 IPR040079 -
Trre5g01889 454 Gene3D - 115 249 - -
Trre5g01889 454 Pfam Glutathione S-transferase, N-terminal domain 37 112 IPR004045 -
Trre5g01889 454 Pfam Glutathione S-transferase, C-terminal domain 163 232 IPR004046 -
Trre5g01889 454 SFLD Main (cytGST) 39 225 - -
Trre5g01889 454 CDD GST_N_EF1Bgamma 39 113 - -
Trre5g01889 454 SUPERFAMILY GST C-terminal domain-like 109 249 IPR036282 -
Trre5g01889 454 FunFam Elongation factor 1-gamma 1 294 454 - -
Trre5g01889 454 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 294 454 IPR036433 GO:0003746|GO:0006414
Trre5g01889 454 SMART EF1G_2 293 401 IPR001662 GO:0003746|GO:0006414
Trre5g01889 454 Pfam Elongation factor 1 gamma, conserved domain 293 401 IPR001662 GO:0003746|GO:0006414
Trre5g01889 454 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 122 250 IPR010987 -
Trre5g01889 454 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 37 454 IPR044628 GO:0004364
Trre5g01889 454 MobiDBLite consensus disorder prediction 245 302 - -
Trre5g01889 454 SUPERFAMILY eEF1-gamma domain 294 454 IPR036433 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01889 Trre-Chr5 14030139 14033888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01889 37 454 Eukaryotic Initiation Factors Gene Family AT1G57720 74.224 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01889 K03233 - gmx:100787125 666.381