Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01878 ATGTTGATGGGTTGCTGCTTTAGTGCAAAGGTCAAAGCTGAGAGTCCTGCACATAATGGTTTGAATTCAAAGGTTGGTGGGAGAGAAGATGATGTTTCGAGCGGGTTAAGCAGAAAGGCGTCTTCTTCGCATCTGCTTCTAACTTCTAGGACTGAGGGTGAGATACTGCAATCCATCAATTTGAAGTGTTTTACAATCAATGAGATAAGAACCGCGACAAGGAACTTTCGTCCAGATAGTATGGTCGGTGAAGGTGGATTTGGTTCCGTATTTAAGGGTTGGATCGATGAACACACGCTAGCCCCTACTAAACCAGGTACTGGTTTTGTCATTGCTGTCAAGAGGCTTAATCAAGAAAGCAGTCAAGGACATAGTGAATGGTTGACAGAAATCAATTACCTTGGACAGCTTCGTCATCCTAATCTTGTGAAATTGGTCGGTTACTGCTTAGAGGATGATTACCGGATTTTGGTATATGAATTTGTGACAAAAGGAAGTTTGGATAATCATTTGTTTAGAAGAGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGAATGAAGATAGCTCTTGATTCTGCTAAGGGACTTGCATTTCTTCACAGTGATGAAGTCGAAGTGATATATCGAGACTTCAAAACTTCTAATATCTTGATCGATTCTGACTATAATGCAAAACTCTCTGATTTCGGGATGGCGAAAGATGGACCAGAAGGTGGTAAGAGCCATGTGTCTACAAGGGTAATGGGCACCCCAGGTTATGCAGCACCTGAGTATCTAGCCACAGGTCACCTAACCAAAAAGAGTGATGTATACAGTTTTGGAGTCGTTCTTTTAGAAATTATGTCGGGAAAACGTGTATTGGACAAAAACAGGCCAACTAAGGAACATAATTTAGTTGAATGGGCAAAACCATTACTTATCAGTAAACGCAAAATCTTTCAAGTCATGGATGCTCGTATAGAAGGTCAATACTCGTCGCGTGAAGCAATGAAAGTAGCTCAGATTGCAATTCAATGTATGTCGGTAGAACAAAAATATCGACCAAACATTGATGAGGTGGTGAGATCATTGGAACAACTTCAGGATTCCAATGACAAAACAAATGGTATTAGTTCAAGCAGCAGTGGTTTAGATCAACGCGGAAATACTGCTAATGAATCATTAACCGGAGAAGGTAGTTCTAATATAAGTTCATCTGCTTCTCCTCTTCATAACTAA 1221 0.4054 MLMGCCFSAKVKAESPAHNGLNSKVGGREDDVSSGLSRKASSSHLLLTSRTEGEILQSINLKCFTINEIRTATRNFRPDSMVGEGGFGSVFKGWIDEHTLAPTKPGTGFVIAVKRLNQESSQGHSEWLTEINYLGQLRHPNLVKLVGYCLEDDYRILVYEFVTKGSLDNHLFRRASYFQPLSWKIRMKIALDSAKGLAFLHSDEVEVIYRDFKTSNILIDSDYNAKLSDFGMAKDGPEGGKSHVSTRVMGTPGYAAPEYLATGHLTKKSDVYSFGVVLLEIMSGKRVLDKNRPTKEHNLVEWAKPLLISKRKIFQVMDARIEGQYSSREAMKVAQIAIQCMSVEQKYRPNIDEVVRSLEQLQDSNDKTNGISSSSSGLDQRGNTANESLTGEGSSNISSSASPLHN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01878 406 PANTHER OS01G0588500 PROTEIN-RELATED 43 362 - -
Trre5g01878 406 MobiDBLite consensus disorder prediction 359 406 - -
Trre5g01878 406 Gene3D Transferase(Phosphotransferase) domain 1 162 380 - -
Trre5g01878 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Trre5g01878 406 SUPERFAMILY Protein kinase-like (PK-like) 49 358 IPR011009 -
Trre5g01878 406 FunFam Serine/threonine-protein kinase BIK1 43 161 - -
Trre5g01878 406 FunFam Probable serine/threonine-protein kinase PBL8 162 377 - -
Trre5g01878 406 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
Trre5g01878 406 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Trre5g01878 406 CDD STKc_IRAK 82 361 - -
Trre5g01878 406 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Trre5g01878 406 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01878 Trre-Chr5 13951538 13954047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01878 3 358 Glycoside Hydrolase AT3G07070 41.873 2.02e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01878 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01878 - - gmx:100800735 598.586