Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01877 ATGTTCATGGCTTGCTGCTTTAGTTCAAAGGTCAAAGCTGAGTGTCCTACACATAATGGTTTGAATGAAGAGGATGTTTTGAGTGGTTTAAGCAAAAAGGCATGTTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTGTTTTACATTCAATGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAAGTGGTCTAGTCGGTAAAAGTGGGTTTGGTTACGTCTATAAGGGGTGGATCGATGAAAACACACTAGCCCCTACTAAACTAGGAACTGGTTTCGTCGTTGCTGTGAAGACGCTTAACCAAGAAAACAACCAGGGACAAAGTGAATGGTTGACAAAAATCAATTACTTAGGACAGCTGCATCATCCAAATCTTGTGAAATTGATTGGTTACTGCTTCGAGGATAACAATCGGATTTTGGTATATGAATTTTTGGCCAAGGGAAGTTTGGACAATCATTTGTTTAGAAGGGTTTCTAACTTCGAGCCGCTCTCTTGGAAAATCCGAATGAAGATAGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTCGAAGTGATACATGGAGACTTCAAAACTTCTAAGATCATGATTGATTCAAACTATAATGCGAAACTATCCGATTTTGGGTTGGAAAAGTATGCATCAGAAGATGATAGGATCGAATCGGAAAGGGAATATTCACAGATTTATGCAGCACCAGAATTTGTAGCCACAGGTAATCTAAGCAAAAAGAGTGATGTATATAGTTTTGGAGTTGTTCTCCTGGAGATTATGTCGGGCAAACGTGCATTGGATAAAAACAGGCCATTTGTGGAACATAATTTAATTGCATCGTTGAAACCATTACTCGTCGACAAATGCAAAATTTTTCGAGCCATGGATGCACGTATAGAAGGACAATATTCGTCGGGTGAAGCAGTGAAAGTAGCTCACATTGTAACTAAATGTCTGTCTGAAGGACCAAAATATAGACCAAATATAGATGAGGTGGTGAGATCATTGGAACAAGTTCAGGATTCCAATGACACAATTAGTGGAGTGGAGAGCTCTTGA 1086 0.3923 MFMACCFSSKVKAECPTHNGLNEEDVLSGLSKKACCSSMTDSEIFQSNNLKCFTFNELKTATRNFRPSGLVGKSGFGYVYKGWIDENTLAPTKLGTGFVVAVKTLNQENNQGQSEWLTKINYLGQLHHPNLVKLIGYCFEDNNRILVYEFLAKGSLDNHLFRRVSNFEPLSWKIRMKIALDAAKGLAFLHSNEVEVIHGDFKTSKIMIDSNYNAKLSDFGLEKYASEDDRIESEREYSQIYAAPEFVATGNLSKKSDVYSFGVVLLEIMSGKRALDKNRPFVEHNLIASLKPLLVDKCKIFRAMDARIEGQYSSGEAVKVAHIVTKCLSEGPKYRPNIDEVVRSLEQVQDSNDTISGVESS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01877 361 ProSiteProfiles Protein kinase domain profile. 65 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01877 361 Gene3D Phosphorylase Kinase; domain 1 39 150 - -
Trre5g01877 361 PANTHER OS01G0588500 PROTEIN-RELATED 38 349 - -
Trre5g01877 361 Gene3D Transferase(Phosphotransferase) domain 1 151 359 - -
Trre5g01877 361 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 151 358 - -
Trre5g01877 361 SUPERFAMILY Protein kinase-like (PK-like) 43 350 IPR011009 -
Trre5g01877 361 Pfam Protein tyrosine and serine/threonine kinase 71 345 IPR001245 GO:0004672|GO:0006468
Trre5g01877 361 FunFam Serine/threonine-protein kinase BIK1 32 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01877 Trre-Chr5 13948085 13950315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01877 30 361 Receptor kinase-like Gene Family AT3G58690 39.826 9.05e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01877 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01877 - - gmx:106795104 464.536