Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01875 ATGGCTAGCTGCTGCTTTAGGGTCAAAGTTGAGAGTGATCTTACACATGATGATTTGAATTCAAAGGTTCTATCTTCAAGGACTGAGAGTGAGATATCAAAATCCAACAATATTTTGAAGTCTTTCACATTCAATGAGTTAGAAACTGCTACAGGGAACTTTAATCTACTGGATGATCTACTTGGTAAAGGTGAGATAATTAAGGGGTGGATTGATGAACACACACTAGCCCCTACTAAACCAGATACTGGTTTTGCCGTTGCTGTAATGACTCCAAAACAACAAACCTATGCGTTGGAAGACTATGACTATTGGACAATAATCAATCATCTGGGACAACTGCATCATCCTAATCTTCTAAAATTGATTGGATATTGCTCTGAGGATTTCCGCCAGATTTCGGTATATGAATTTTTTACCATGGAAAGTTTGGACAAGTATTTGTCTAGAACAACTTCTAACTTTGAGCCACTCCCTTGGAAAATCCGAATGAAGATAGCTCTTGATGTTGCTAAGGGTCTTGCATATCTTCATAGTGATGAAGTGAACATTATACTTGGAGACTTCGAAACTTCTAAAATCTTGATTGATTCTAATCACAATGCAAAACTATATAATTTTGGGATGGTAAGATCATATGAAGATATGATCGACCCAGATATGATAGATATGATATCTATGCAACGCTCTAGAACATACACGGCACCTGAGTGTAAAGGTGGCCTAACGAAAGAGGGTGATGTATACAGTTTTGGCGTTGTTCTACTGGAAATTATGTTAGGAAGACGCGCATATGATAGTACCAGGAAGCCATTTCGGAAACGTCATTTAGTTGAATGGGCCAAGCCATTACTTTTCTGCAATCTGATATGGACTCATTTGTGGGAAAACAGTATCAAAGGAAGAAAAGCTCCAATTCAGTTTGTTAGAATAAGTTGTTAG 942 0.3769 MASCCFRVKVESDLTHDDLNSKVLSSRTESEISKSNNILKSFTFNELETATGNFNLLDDLLGKGEIIKGWIDEHTLAPTKPDTGFAVAVMTPKQQTYALEDYDYWTIINHLGQLHHPNLLKLIGYCSEDFRQISVYEFFTMESLDKYLSRTTSNFEPLPWKIRMKIALDVAKGLAYLHSDEVNIILGDFETSKILIDSNHNAKLYNFGMVRSYEDMIDPDMIDMISMQRSRTYTAPECKGGLTKEGDVYSFGVVLLEIMLGRRAYDSTRKPFRKRHLVEWAKPLLFCNLIWTHLWENSIKGRKAPIQFVRISC 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01875 313 PANTHER OS01G0588500 PROTEIN-RELATED 27 293 - -
Trre5g01875 313 Gene3D Transferase(Phosphotransferase) domain 1 140 309 - -
Trre5g01875 313 Gene3D Phosphorylase Kinase; domain 1 27 138 - -
Trre5g01875 313 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01875 313 SUPERFAMILY Protein kinase-like (PK-like) 32 287 IPR011009 -
Trre5g01875 313 Pfam Protein tyrosine and serine/threonine kinase 64 268 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01875 Trre-Chr5 13934682 13936262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01875 35 313 Glycoside Hydrolase AT3G07070 35.862 3.43e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01875 PK_Tyr_Ser-Thr 2.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01875 - - gmx:100775335 252.677