Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01873 ATGTTCATGGCTTGCTGCTTTAGTTCAAAGGTCAAAGCTGAGTGTCCTACACATAATGGTTTGAATGAAGAGGATGTTTTGAGTGGTTTAAGCAAAAAGGCATGCTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTGTTTTACATTCAATGAGGTAAAAACTGCTACAAGGAACTTTCATCCAGATGGTCTAGTGGGTGAAGGTGGATTTGGATGCGTATATAAGGGGTGGATCGATGAAAACATACTAGCCCCTACTAAACTAGGAACTGGTTTTGTCATTGCTGTGAAGACGCTTAACCAAGAAAACAACCAGGGACAAAGTGAATGGTTGACAAAAATCAATAACTTAGGACAGCTGCATCATCCTAATCTTGTGAAATTGATTGGTTACTGCTTCGAGGATAACAATCGGATTTTGGTATATGAATTTTTTACCAAGGGAAGTTTGGAGAATCATTTGTTTAGAAGGGTTTCTAACTTTGAGCCACTCCCTTGGAAAATTCGAATGAAGATAGCTCTTGACGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTGGAAATGATACATGGAGGCTTCAAAACTTCTAATATCATGATTGATTCGAACTATAATGCGAAACTATCCGATTTTGGGTTGAAAAAATATGGATCAGATCGTAGGATCGTAACAGAAAGGGCATATCCACAGATTTACGCAGCACGGGAGTTTATAGAAACAGGTAATCTAAGCAAAAAGAGTGAAGTATACAGTTTTGGAGTTGTTCTCCTCGAAATTATCTCAGGAAAACGTGGATTGGATAAAAACAGGCCATTTGTGGAACAAAATTTAGTTGCATGGGCTAAACCATTACTCGTAAGCAAACACAAAATCTCTCGAGCCATTGATGCTTGTTTAGAAGGCCAATATTCGTCGGAAGAAGCAATGAAAAAGCAAGTGGGAAGCTTGAATCAACCATCTAAAAGTTTTACGTTCATGGCTTGCTGCTGTAGGGTCAAAGCTGAGTGTCCTACACATAATGAGGTAAAAACTTCTAGGATTGAGGGTGAGATATTGGAATCCAACAATTTGAAGTGTTTCACATTGAATGAGGTAAAAACTGCTACAAGGAACTTTCATCCAGATGGTCTAGTGGGTGAAGGTGGATTTGGTTCTGTATTTAAGGGTTGGATCGATGAACAAACACTAGCTCCAACTCCAACTAAATCAGGTGCTGATTTTGTCATTGCTGTGAAGAGGCTTTACCAAGAAACTAACAAAGGACTCGGTAAATGGTTGCTTCATCATCCTAATCTTGTGAAACTAATTGGTTACTGCTTCGAGAATGAACACCAGATTTTAGTATATGAGTTTTTGACCAAGGGATGTTTGGATAATCATTTGTTTGGAAGAGTTTCTAACTTTCAACCACTCTCTTGGAAAATCCGTATGAAGATAGCTCTTGATGTTGCGAAGGGTCTTGCGTTTCTTCATAGAGATGAAGTCGGTGTGATATATCGATACTTCAAAACTTCTAAAATCTTTATTGACTCTAATTACAATGCAAAGTTATCTGTTGTTGGGTTGGAAAAAGATAGATCAGAAGATGATACAATGGACTCAGAAGTGGTATTTATAGGCACCACAGTTTATATAGCACCTGAGTATTTATTCAAAGGCCGCCTAACAAAAAAGATTGATGTGTATAGTTTCGGGGTTGTTCTCTTGGAAATTATGTCAGGCAAACGTGCATTTGATAGAGAAAGGCCACTTGAGGAACAAAATCTAGTTGAATGGGCTAAGCCATTACTCGTCAGCAAACGTAAGATCTCTAAAGTCATTGATTCCCATATACAAGGTCAATATTCGTCGCGTGAAGTAATGAAAGTAGCTCGCGTTATAATTCAATGTTTGTCTAAAAGACCAAAATATAGACCAAACATAGATGAAGTGATGAGATCATTGGAGCAACTTCATGATTCCAATGACATAGTTGATGGAGTGGGGAACTCTCAATCTCCACATCAAACAATCAACCATCAAAACAAATGGCCATATTTCAAGCAGCAGTGGTTTAGGTCATGGAAAAAGTGTTAA 2100 0.3819 MFMACCFSSKVKAECPTHNGLNEEDVLSGLSKKACCSSMTDSEIFQSNNLKCFTFNEVKTATRNFHPDGLVGEGGFGCVYKGWIDENILAPTKLGTGFVIAVKTLNQENNQGQSEWLTKINNLGQLHHPNLVKLIGYCFEDNNRILVYEFFTKGSLENHLFRRVSNFEPLPWKIRMKIALDAAKGLAFLHSNEVEMIHGGFKTSNIMIDSNYNAKLSDFGLKKYGSDRRIVTERAYPQIYAAREFIETGNLSKKSEVYSFGVVLLEIISGKRGLDKNRPFVEQNLVAWAKPLLVSKHKISRAIDACLEGQYSSEEAMKKQVGSLNQPSKSFTFMACCCRVKAECPTHNEVKTSRIEGEILESNNLKCFTLNEVKTATRNFHPDGLVGEGGFGSVFKGWIDEQTLAPTPTKSGADFVIAVKRLYQETNKGLGKWLLHHPNLVKLIGYCFENEHQILVYEFLTKGCLDNHLFGRVSNFQPLSWKIRMKIALDVAKGLAFLHRDEVGVIYRYFKTSKIFIDSNYNAKLSVVGLEKDRSEDDTMDSEVVFIGTTVYIAPEYLFKGRLTKKIDVYSFGVVLLEIMSGKRAFDRERPLEEQNLVEWAKPLLVSKRKISKVIDSHIQGQYSSREVMKVARVIIQCLSKRPKYRPNIDEVMRSLEQLHDSNDIVDGVGNSQSPHQTINHQNKWPYFKQQWFRSWKKC 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01873 699 FunFam Serine/threonine-protein kinase BIK1 32 150 - -
Trre5g01873 699 Pfam Protein tyrosine and serine/threonine kinase 386 656 IPR001245 GO:0004672|GO:0006468
Trre5g01873 699 Pfam Protein tyrosine and serine/threonine kinase 71 272 IPR001245 GO:0004672|GO:0006468
Trre5g01873 699 Gene3D Phosphorylase Kinase; domain 1 359 459 - -
Trre5g01873 699 SUPERFAMILY Protein kinase-like (PK-like) 43 302 IPR011009 -
Trre5g01873 699 ProSitePatterns Protein kinases ATP-binding region signature. 71 103 IPR017441 GO:0005524
Trre5g01873 699 ProSiteProfiles Protein kinase domain profile. 65 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01873 699 ProSiteProfiles Protein kinase domain profile. 380 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01873 699 Gene3D Transferase(Phosphotransferase) domain 1 460 675 - -
Trre5g01873 699 Gene3D Transferase(Phosphotransferase) domain 1 151 357 - -
Trre5g01873 699 SUPERFAMILY Protein kinase-like (PK-like) 370 662 IPR011009 -
Trre5g01873 699 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 460 668 - -
Trre5g01873 699 Gene3D Phosphorylase Kinase; domain 1 36 150 - -
Trre5g01873 699 PANTHER OS01G0588500 PROTEIN-RELATED 38 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01873 Trre-Chr5 13920540 13934003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01873 362 677 Glycoside Hydrolase AT3G07070 37.615 4.41e-64 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01873 PK_Tyr_Ser-Thr 3.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01873 - - ccaj:109789667 507.294