Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01870 ATGACTGAGGGTAAGATATTATCCAACAATTTGAAGTGTTACACATTCGATCAGTTAAATTTTGCTACAAGGAACTTTCATCGAAATGAACTAGTTGGTGAAGGTGAATCCGGTTCTGTATATAAGGGGTGGTTATGGATCGTTGAACACACAGCCCCTGCCAAACGAGGTACTGGTTTTTTTGTTGCTTTGAAGAAGATTTACAGACAAAGAAGACTTTGGAGAGGAAGAGACGATAAATGGTTGACAGAAATGTATTACATGGAACAGCTGCATCATCCTAATCTTGTAAAATTGATTGGTTACTGTTTAGAGGATCATTTCCAGCAATACTTGGTATATGAGTTTTTGGCCAAGGGGAGTTTGGATAATCATTTGTTTAAAACAGCAACTTCTTCTAACTTTGAGCCACTCACTTGGAAAACCCGAATGAAGATAGCTCTTGATGTTGCTAAGGGTCTTGCATTTCTTCATAGTGATCAAGTGAAAATGATAGTTGGAGACTTCAAAATTTCTAAAATCTTGATTGATTCTAACTACAATGCAAAACTAAATTATTTTGGGCGGGCAAACTATTTACAAAATGAAGATTCGATCGACCCAGATATGGTATGTATACAACAACACACCCATATTTACACAGCACCTGAGTATGAACAGACAGCTCAACCATCCAAAAAGAGTGATGTATACAGTTTTGGGGTTATTCTCCTTGAAATCATGTCAGGAAAACGTGCATCAGATTACATCAGGTCACCATTGGAACATAATTTAGTTCCGTGGGCCAAATCATTCCATATCAACAAACGCAAGATCCATCAATTAATCGATTCGCATATAGAAGGCCAATACTCACCGCGTGAAGCAATGGAAGTAGCTAATATTGTAATTCAATGTCTTTCTGCAAGACCAACACATAGACCAAACATTGATGAGGTTGTGAGTCAAAAGAGCTGGAAAACACTTCTCATTACTAAAGCAAGTTATCTCACTTTGAAGAATGCGTGTTTGAATGAAGAGGATCTTTTGAGTGGTTTAAGCAAAAAGGGATGTTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTGTTTTACATTCAATGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAAGTGGTCTAGTCGGTAAAAGTGGATTTGGTTGCGTATATAAGGGGTGGATCGATGAAAACACACTAGCCCCTACTAAACTAGGAACTGGTTTCGTCATTGCTGTGAAGACTCTTAACCAAGAAAACAACCAGGGACAAAGTGAATGGTTGACAAAAATCAATTACTTAGGACAGCTGCATCATCCAAATCTTGTGAAATTGATTGGTTACTGCTTCGAGGATAACAATCGGATTTTGGTATATGAATTTTTTACCAAGGGAAATTTGGACAATCATTTGTTTAGAAGGGTTTCTAACTTTGAGCCACTCTCTTGGAAAATTCGAATGAAGATAGCTCTTGACGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTGGAAATGATACATGGAGGCTTCAAAACTTCTAAGATCATGATTGATTCGAACTATAATGCGAAACTATCCGATTTTGGGTTGGAAAAATATGGATCAGATCATACGGTCGTAATAGAAGGGGCATATCCAGAGATTTACGCAGCACGGGAGTTTATAGAAACAGGTCATCTAAGCAAAAAGAGTGATGTATACAGTTTTGGAGTTGTTCTCCTCGAAATTATGTCAGGAAAACGTGGATTGGATTTAAACAGGCCATTTGTGGAACAAAATTTAGTTGCATGGGCAAAACCATTACTCGTAAGCAAACACAAAATCTCTCGAGCCATTGATGCTTGTTTAGAAGGCCAATATTCGTCGGAAGAAGCAATGATAGTAGGTCACATTGTAATTAAATGTCTGTCTCGAAGACCAGATTATAGACCAAACATAGATGAGGTGGTGGGATCATTGGAACAAGTTCAGGATTCCAATGACACAATTAGTGGAGTGGGGAGCTCTTAA 2031 0.3806 MTEGKILSNNLKCYTFDQLNFATRNFHRNELVGEGESGSVYKGWLWIVEHTAPAKRGTGFFVALKKIYRQRRLWRGRDDKWLTEMYYMEQLHHPNLVKLIGYCLEDHFQQYLVYEFLAKGSLDNHLFKTATSSNFEPLTWKTRMKIALDVAKGLAFLHSDQVKMIVGDFKISKILIDSNYNAKLNYFGRANYLQNEDSIDPDMVCIQQHTHIYTAPEYEQTAQPSKKSDVYSFGVILLEIMSGKRASDYIRSPLEHNLVPWAKSFHINKRKIHQLIDSHIEGQYSPREAMEVANIVIQCLSARPTHRPNIDEVVSQKSWKTLLITKASYLTLKNACLNEEDLLSGLSKKGCCSSMTDSEIFQSNNLKCFTFNELKTATRNFRPSGLVGKSGFGCVYKGWIDENTLAPTKLGTGFVIAVKTLNQENNQGQSEWLTKINYLGQLHHPNLVKLIGYCFEDNNRILVYEFFTKGNLDNHLFRRVSNFEPLSWKIRMKIALDAAKGLAFLHSNEVEMIHGGFKTSKIMIDSNYNAKLSDFGLEKYGSDHTVVIEGAYPEIYAAREFIETGHLSKKSDVYSFGVVLLEIMSGKRGLDLNRPFVEQNLVAWAKPLLVSKHKISRAIDACLEGQYSSEEAMIVGHIVIKCLSRRPDYRPNIDEVVGSLEQVQDSNDTISGVGSS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01870 676 ProSiteProfiles Protein kinase domain profile. 26 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01870 676 ProSiteProfiles Protein kinase domain profile. 381 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01870 676 Gene3D Transferase(Phosphotransferase) domain 1 117 328 - -
Trre5g01870 676 Gene3D Transferase(Phosphotransferase) domain 1 467 672 - -
Trre5g01870 676 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 467 672 - -
Trre5g01870 676 FunFam Serine/threonine-protein kinase BIK1 349 466 - -
Trre5g01870 676 Pfam Protein tyrosine and serine/threonine kinase 387 658 IPR001245 GO:0004672|GO:0006468
Trre5g01870 676 Pfam Protein tyrosine and serine/threonine kinase 28 315 IPR001245 GO:0004672|GO:0006468
Trre5g01870 676 ProSitePatterns Protein kinases ATP-binding region signature. 32 65 IPR017441 GO:0005524
Trre5g01870 676 FunFam Lectin-domain containing receptor kinase A4.3 117 331 - -
Trre5g01870 676 SUPERFAMILY Protein kinase-like (PK-like) 10 322 IPR011009 -
Trre5g01870 676 PANTHER OS01G0588500 PROTEIN-RELATED 354 664 - -
Trre5g01870 676 Gene3D Phosphorylase Kinase; domain 1 355 466 - -
Trre5g01870 676 SUPERFAMILY Protein kinase-like (PK-like) 359 664 IPR011009 -
Trre5g01870 676 Gene3D Phosphorylase Kinase; domain 1 6 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01870 Trre-Chr5 13902275 13905985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01870 348 676 Receptor kinase-like Gene Family AT3G58690 39.823 5.95e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01870 PK_Tyr_Ser-Thr 5.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01870 - - rcn:112187249 514.227