Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01869 ATGACTGAGGGTAAGATATTATCCAACAATTTGAAGTGTTACACATTCGATCAGTTAAATTTTGCTACAAGGAACTTTCATCGAAATGAACTAGTTGGTGAAGGTGAATCCGGTTCTGTATATAAGGGGTGGTTATGGATCGTTGAACACACAGCCCCTGCCAAACGAGGTACTGGTTTTTTTGTTGCTTTGAAGAAGATTTACAGACAAAGAAGACTTTGGAGAGGAAGAGACGATAAATGGTTGACAGAAATGTATTACATGGAACAGCTGCATCATCCTAATCTTGTAAAATTGATTGGTTACTGTTTAGAGGATCATTTCCAGCAATACTTGGTATATGAGTTTTTGGCCAAGGGGAGTTTGGATAATCATTTGTTTAAAACAGCAGCAACTTCTTCTAACTTTGAGCCACTCACTTGGAAAACCCGAATGAAGATAGCTCTTGATGTTGCTAAGGGTCTTGCATTTCTTCATAGTGATCAAGTGAAAATGATAGTTGGAGACTTCAAAATTTCTAAAATCTTGATTGATTCTAACTACAATGCAAAACTAAATTATTTTGGGCGGGCAAACTATTTACAAAATGAAGATTCGATCGACCCAGATATGGTATGTATACAACAACACACCCATATTTACACAGCACCTGAGTATGAACAGACAGCTCAACCATCCAAAAAGAGTGATGTATACAGTTTTGGGGTTATTCTCCTTGAAATCATGTCAGGAAAACGTGCATCAGATTACATCAGGTCACCATTGGAACATAATTTAGTTCCGTGGGCCAAATCATTCCATATCAACAAACGCAAGATCCATCAATTAATCGATTCGCATATAGAAGGCCAATACTCACCGCGTGAAGCAATGGAAGTAGCTAATATTGTAATTCAATGTCTTTCTGCAAGACCAACACATAGACCAAACATTGATGAGGTTGTGAGAAGAGAAAAGATCTGGACATATTACACATACCTCAGACTATATGCATTGTCTGTGCCTGTTGAAAGTTTGAATGAAGAGGATCTTTTGAGTGGTTTAAGCAAAAAGGGATGTTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTGTTTTACATTCAATGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAAGTGGTCTAGTCGGTAAAAGTGGATTTGGTTGCGTATATAAGGGGTGGATCGATGAAAACACACTAGCCCCTACTAAACTAGGAACTGGTTTCGTCATTGCTGTGAAGACTCTTAACCAAGAAAACAACCAGGGACAAAGTGAATGGTTGACAAAAATCAATTACTTAGGACAGCTGCATCATCCAAATCTTGTGAAATTGATTGGTTACTGCTTCGAGGATAACAATCGGATTTTGGTATATGAATTTTTTACCAAGGGAAATTTGGACAATCATTTGTTTAGAAGGGTTTCTAACTTTGAGCCACTCTCTTGGAAAATTCGAATGAAGATAGCTCTTGACGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTGGAAATGATACATGGAGGCTTCAAAACTTCTAAGATCATGATTGATTCGAACTATAATGCGAAACTATCCGATTTTGGGTTGGAAAAATATGGATCAGATCATACGGTCGTAATAGAAGGGGCATATCCAGAGATTTACGCAGCACGGGAGTTTATAGAAACAGGTCATCTAAGCAAAAAGAGTGATGTATACAGTTTTGGAGTTGTTCTCCTCGAAATTATGTCAGGAAAACGTGGATTGGATTTAAACAGGCCATTTGTGGAACAAAATTTAGTTGCATGGGCAAAACCATTACTCGTAAGCAAACACAAAATCTCTCGAGCCATTGATGCTTGTTTAGAAGGCCAATATTCGTCGGAAGAAGCAATGATAGTAGGTCACATTGTAATTAAATGTCTGTCTCGAAGACCAGATTATAGACCAAACATAGATGAGGTGGTGGGATCATTGGAACAAGTTCAGGATTCCAATGACACAATTAGTGGAGTGGGGAGCTCTTAA 2037 0.3814 MTEGKILSNNLKCYTFDQLNFATRNFHRNELVGEGESGSVYKGWLWIVEHTAPAKRGTGFFVALKKIYRQRRLWRGRDDKWLTEMYYMEQLHHPNLVKLIGYCLEDHFQQYLVYEFLAKGSLDNHLFKTAATSSNFEPLTWKTRMKIALDVAKGLAFLHSDQVKMIVGDFKISKILIDSNYNAKLNYFGRANYLQNEDSIDPDMVCIQQHTHIYTAPEYEQTAQPSKKSDVYSFGVILLEIMSGKRASDYIRSPLEHNLVPWAKSFHINKRKIHQLIDSHIEGQYSPREAMEVANIVIQCLSARPTHRPNIDEVVRREKIWTYYTYLRLYALSVPVESLNEEDLLSGLSKKGCCSSMTDSEIFQSNNLKCFTFNELKTATRNFRPSGLVGKSGFGCVYKGWIDENTLAPTKLGTGFVIAVKTLNQENNQGQSEWLTKINYLGQLHHPNLVKLIGYCFEDNNRILVYEFFTKGNLDNHLFRRVSNFEPLSWKIRMKIALDAAKGLAFLHSNEVEMIHGGFKTSKIMIDSNYNAKLSDFGLEKYGSDHTVVIEGAYPEIYAAREFIETGHLSKKSDVYSFGVVLLEIMSGKRGLDLNRPFVEQNLVAWAKPLLVSKHKISRAIDACLEGQYSSEEAMIVGHIVIKCLSRRPDYRPNIDEVVGSLEQVQDSNDTISGVGSS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01869 678 PANTHER OS01G0588500 PROTEIN-RELATED 357 666 - -
Trre5g01869 678 Pfam Protein tyrosine and serine/threonine kinase 28 316 IPR001245 GO:0004672|GO:0006468
Trre5g01869 678 Pfam Protein tyrosine and serine/threonine kinase 389 660 IPR001245 GO:0004672|GO:0006468
Trre5g01869 678 ProSiteProfiles Protein kinase domain profile. 383 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01869 678 Gene3D Transferase(Phosphotransferase) domain 1 469 674 - -
Trre5g01869 678 Gene3D Transferase(Phosphotransferase) domain 1 117 324 - -
Trre5g01869 678 Gene3D Phosphorylase Kinase; domain 1 357 468 - -
Trre5g01869 678 Gene3D Phosphorylase Kinase; domain 1 6 116 - -
Trre5g01869 678 SUPERFAMILY Protein kinase-like (PK-like) 10 339 IPR011009 -
Trre5g01869 678 ProSitePatterns Protein kinases ATP-binding region signature. 32 65 IPR017441 GO:0005524
Trre5g01869 678 ProSiteProfiles Protein kinase domain profile. 26 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01869 678 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 469 674 - -
Trre5g01869 678 FunFam Serine/threonine-protein kinase BIK1 351 468 - -
Trre5g01869 678 SUPERFAMILY Protein kinase-like (PK-like) 361 666 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01869 Trre-Chr5 13902275 13905985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01869 321 678 Receptor kinase-like Gene Family AT3G58690 38.005 4.39e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01869 PK_Tyr_Ser-Thr 6.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01869 - - rcn:112187249 511.916