Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01868 ATGTTCATGGCTTGCTGCTTTAGTTCAAAGGTCAAAGCTGAGTGTCCTACACATAATGGTTTGAATGAAGAGGAAGTTTTGAGTGGTTTTAGCAAAAAGGGATGCTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTCTTTTACATTCAATGAGGGGTGGATCGATGAAAAGACACTAGCCCCTACTAAACTAGGAACTGGTTTCGCCGTTGCTGTAAAGAAGCTTAACTGGGAAAACAACCAGGGACACAGCGAATGGTTGCGAAAAATCAATTACTTAGGACAGCTGCATCATCCAAATCTTGTGAAATTGATTGGTTACTGCTTCGAGGATAACAATCGGATTTTGGTATATGAATTTCTTACCAAGGGAAGTTTGGACAATCATTTGTTTAGAAGGGTTTCTAACTTTGAGCCACTCTCTTGGAAAATTCGAATGAAGATAGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTGGAAGTGATACATGGAGGTGTCAAAACTTCTAAGATCATGATTGATTCGAACTATAATGCGAAACTATCCGATTTTGGGTTGAAAAAATATGGATCAGATCATAGGATCGTAACACAAAGGGCATATCCACAGATTTACGCAGCACGGGAGTTTATAGAAACAGGTAATCTAAGCAAAAAGAGTGAAGTATACAGTTTTGGAGTTGTTCTCCTGGAAATTATGTCAGGAAAACGTGGATCGGATAAAAACAGGCCATTTGTGGAACAAAATTTAGTTGAATGGGCAAAACCATTACTCGTAAGCAAACACAAAATCTCTCGAGCCATTGATGCTCGTTTAGAAGGCCAATATTCGTCGGAAGAAGCAATGAAAGTAGGTCACATTGTAATTAAATGTCTGTCTCGAAGACCAGATTATAGACCAAACATAGATGAGGTGGTGAGATCATTGGAACAGCTTCAGGATTCCAATGACACAATTAGTGGAGTGGTCATATCTCAAGCAGTAGTGGTTTAG 1026 0.3918 MFMACCFSSKVKAECPTHNGLNEEEVLSGFSKKGCCSSMTDSEIFQSNNLKSFTFNEGWIDEKTLAPTKLGTGFAVAVKKLNWENNQGHSEWLRKINYLGQLHHPNLVKLIGYCFEDNNRILVYEFLTKGSLDNHLFRRVSNFEPLSWKIRMKIALDAAKGLAFLHSNEVEVIHGGVKTSKIMIDSNYNAKLSDFGLKKYGSDHRIVTQRAYPQIYAAREFIETGNLSKKSEVYSFGVVLLEIMSGKRGSDKNRPFVEQNLVEWAKPLLVSKHKISRAIDARLEGQYSSEEAMKVGHIVIKCLSRRPDYRPNIDEVVRSLEQLQDSNDTISGVVISQAVVV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01868 341 Gene3D Transferase(Phosphotransferase) domain 1 127 337 - -
Trre5g01868 341 SUPERFAMILY Protein kinase-like (PK-like) 70 328 IPR011009 -
Trre5g01868 341 PANTHER OS01G0588500 PROTEIN-RELATED 56 324 - -
Trre5g01868 341 Gene3D Phosphorylase Kinase; domain 1 35 126 - -
Trre5g01868 341 ProSiteProfiles Protein kinase domain profile. 44 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01868 341 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 127 332 - -
Trre5g01868 341 Pfam Protein tyrosine and serine/threonine kinase 68 320 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01868 Trre-Chr5 13899139 13901215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01868 32 323 Receptor kinase-like Gene Family AT3G58690 38.339 2.68e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01868 PK_Tyr_Ser-Thr 4.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01868 - - gmx:106795104 405.216