Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01867 ATGTTCATGGCTTGCTGCTTTAGTTCAAAGGTCAAAGCTGAGTGTCCTACACATAATGGTTTGAATGAAGAGGAAGTTTTGAGTGGTTTTAGCAAAAAGGGATGCTGTTCCTCTATGACTGACAGTGAGATATTTCAATCCAATAACTTGAAGTCTTTTACATTCAATGAGGTAAAATCTGCTACAAGGAACTTTCATCCAAGTGGTCTACTTGGTAAAAGTGTGTTTCGTTACGTATATAAGGGGTGGATCGATGAAAAGACACTAGCCCCTACTAAACTAGGAACTGGTTTCGCCGTTGCTGTAAAGAAGCTTAACTGGGAAAACAACCAGGGACACAGCGAATGGTTGCGAAAAATCAATTACTTAGGACAGCTGCATCATCCAAATCTTGTGAAATTGATTGGTTACTGCTTCGAGGATAACAATCGGATTTTGGTATATGAATTTCTTACCAAGGGAAGTTTGGACAATCATTTGTTTAGAAGGGTTTCTAACTTTGAGCCACTCTCTTGGAAAATTCGAATGAAGATAGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTAATGAAGTGGAAGTGATACATGGAGGTGTCAAAACTTCTAAGATCATGATTGATTCGAACTATAATGCGAAACTATCCGATTTTGGGTTGAAAAAATATGGATCAGATCATAGGATCGTAACACAAAGGGCATATCCACAGATTTACGCAGCACGGGAGTTTATAGAAACAGGTAATCTAAGCAAAAAGAGTGAAGTATACAGTTTTGGAGTTGTTCTCCTGGAAATTATGTCAGGAAAACGTGGATCGGATAAAAACAGGCCATTTGTGGAACAAAATTTAGTTGAATGGGCAAAACCATTACTCGTAAGCAAACACAAAATCTCTCGAGCCATTGATGCTCGTTTAGAAGGCCAATATTCGTCGGAAGAAGCAATGAAAGTAGGTCACATTGTAATTAAATGTCTGTCTCGAAGACCAGATTATAGACCAAACATAGATGAGGTGGTGAGATCATTGGAACAGCTTCAGGATTCCAATGACACAATTAGTGGAGTGGTCATATCTCAAGCAGTAGTGGTTTAG 1098 0.3898 MFMACCFSSKVKAECPTHNGLNEEEVLSGFSKKGCCSSMTDSEIFQSNNLKSFTFNEVKSATRNFHPSGLLGKSVFRYVYKGWIDEKTLAPTKLGTGFAVAVKKLNWENNQGHSEWLRKINYLGQLHHPNLVKLIGYCFEDNNRILVYEFLTKGSLDNHLFRRVSNFEPLSWKIRMKIALDAAKGLAFLHSNEVEVIHGGVKTSKIMIDSNYNAKLSDFGLKKYGSDHRIVTQRAYPQIYAAREFIETGNLSKKSEVYSFGVVLLEIMSGKRGSDKNRPFVEQNLVEWAKPLLVSKHKISRAIDARLEGQYSSEEAMKVGHIVIKCLSRRPDYRPNIDEVVRSLEQLQDSNDTISGVVISQAVVV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01867 365 Gene3D Transferase(Phosphotransferase) domain 1 151 361 - -
Trre5g01867 365 PANTHER OS01G0588500 PROTEIN-RELATED 38 348 - -
Trre5g01867 365 Gene3D Phosphorylase Kinase; domain 1 39 150 - -
Trre5g01867 365 ProSiteProfiles Protein kinase domain profile. 65 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01867 365 Pfam Protein tyrosine and serine/threonine kinase 71 344 IPR001245 GO:0004672|GO:0006468
Trre5g01867 365 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 151 356 - -
Trre5g01867 365 FunFam Serine/threonine-protein kinase BIK1 33 150 - -
Trre5g01867 365 SUPERFAMILY Protein kinase-like (PK-like) 43 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01867 Trre-Chr5 13899139 13901215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01867 32 347 Receptor kinase-like Gene Family AT3G58690 39.628 1.34e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g01867 PK_Tyr_Ser-Thr 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01867 - - gmx:106795104 441.039