Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01858 ATGGACACTCCTCATTCACCTTCTTCCTGTTCATCTTCTTCATCCACCTGTTCATTTGAAGGACACGCCACCGACACAATCTATTTAGAAACGGAGGAGCCACAAACGCCGTTAGCCGTTCGACGTGCTCTTCAGCTTCTCAAATCCGGCGTACCGGAGTTACGGATTCAAGCCGCGCGTGATATTCGGAAACTCACCAAAACTTCACACCGGTGTCGGCGTCAGCTCTCTGAAGCTGTCGGTCCACTCGTTTCTATGCTCCGAGTCGACTCACCCGAGTCACATGAACCTGCGCTCCTCGCTTTGCTTAATCTCGCTGTTAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCAGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGCGTCTGCAACTGCAGCTTTGCTCACACTATCAGCCTCTTCAACCAACAAACCAATTATTAGTGCTTGTGGCGCCATTCCCCTTCTCGTAGAGATTCTTAAAGATGGAAGCCCACAGGCAAAAGCTGATGCAGTTATGGCTCTCGCTAATTTATCAACATATCCTGATATTCTTAGCATTATTCTTGAAACAAATCCAATCCCTTTCATTGTTGATATCCTCAAAACTTGCAAAAAGTCCTCAAAAACAGCTGAAAAATGTTGTGCTTTAATAGAACCTTTGGTGGATTACGAAGAATGCAGAACTTCCTTGACATCTGAGGAAGGTGGGATTCTCTCAGTTGTGGAGGTTCTCGAAAATGGCACTCTTCAAAGTAGGGAGCACGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACAGGGAACCAATTCTTAAAGAAGGTGTCATTCCAGGACTACTCGAGCTCACTGTTCAAGGAACACCAAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGGTCTGAAATTCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAGATTGATGGGGATGAACAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTTAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGGGCGCTCGTATGCACCCCAAGTGATCTTCCCATAGCTGGCTGTACTTCTGAAGTTTCTTTCAAGTAA 1185 0.4473 MDTPHSPSSCSSSSSTCSFEGHATDTIYLETEEPQTPLAVRRALQLLKSGVPELRIQAARDIRKLTKTSHRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSQNPNLQASATAALLTLSASSTNKPIISACGAIPLLVEILKDGSPQAKADAVMALANLSTYPDILSIILETNPIPFIVDILKTCKKSSKTAEKCCALIEPLVDYEECRTSLTSEEGGILSVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILKEGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCTSEVSFK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01858 394 Pfam Armadillo/beta-catenin-like repeat 110 148 IPR000225 GO:0005515
Trre5g01858 394 SUPERFAMILY ARM repeat 41 340 IPR016024 -
Trre5g01858 394 FunFam U-box domain-containing protein 4 22 376 - -
Trre5g01858 394 Gene3D - 22 377 IPR011989 -
Trre5g01858 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Trre5g01858 394 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 189 IPR000225 GO:0005515
Trre5g01858 394 SMART arm_5 150 190 IPR000225 GO:0005515
Trre5g01858 394 SMART arm_5 66 107 IPR000225 GO:0005515
Trre5g01858 394 SMART arm_5 109 149 IPR000225 GO:0005515
Trre5g01858 394 PANTHER U BOX DOMAIN-CONTAINING 39 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01858 Trre-Chr5 13820338 13823672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01858 40 317 U-box Gene Family AT2G23140 32.143 1.94e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01858 - - gmx:100809684 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01858 5 13820338 13823672 Trre5g01858 5 13820338 13823672 ECH