Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01856 ATGATCTGGGAATTTGGTTTTTTATGTATTGGAAAAAACCCTTCAAAAAGAAACTTAAGTAGTGATTACCAAGATGAAAATGGTGACAAAAGAATGAATTTTGAGCACAACAAAGCTTGGTTGTTAGCTGAGTCTGGTGGGTGTGGAGCAGAATTGAACAATGCTGATCCTCAATCTGTTCATTCTTCTTTCAGATTTAGTTTCTGTTCTCAAGTTGAGTTGGAGTCTTTGAATTTGAGTTCTTCTTCTGCTGCAACTGTTTTGATGGTGAATTTGGATAATGGGGTTAGTGAATCTCTTGTTAAAGAGTTGAAATTGAGGAGAATTGAGTCTTTGGAGAAGACTATTTCTCCTGTTGCTCACTCTTTGATTAGGTTTAGCTATGGTGAAATTGTCAATGCTACTAGGAATTTCTCCAAAGGTAGGGTATTGGGGAGAGGTGCATTGAGCTGTGTTTATAGGGGAAGAGTTGGACTTTTGAGAACTGTTGTAGCAATTAAACAGTTGGACAAAGAAGATAAGGAATCTGCAAAAGCCTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAATCCAAATGTTGTTCCACTTGTTGGGTTTTGTATCGACTCTGAGGAAGGTTTGTTTTTGGTGTACAAGTATGTCTCGGGTGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAAAGGTGGTAACGGTAATTCAACACTTCCATGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCAGAAGCTATAGCTTATCTGCATAGTGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAACCCTCTAACATTCTGCTTTCTTCTAAGAAGACTCCAAAGTTGTGTGATTTCGGATTAGCAACATGGACATCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTTAAAGGAACATTTGGATATTTGGCTCCAGAGTATTTCCAACATGGGAAAATATCCGATAAGACTGATGTTTACGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGCCGGAAACCAATTGAAACAAAAAGGTCTCCAGGAGAGGAGAATTTAGTCTTATGGGCTAAGCCTTATCTACAAAAGGGGAAAGGAGCCATTGAAGAGTTGCTTGATCCTCAACTGAAGTGCAATTTGCGATTCTCAAATCAAATCGGTAGAATGATTGAAGCAGCAGCTGCTTGTGTAACAAATGAAGAATCTAGGAGACCTGGCATAAATGAGGTTATCGCAATACTGAAAGGTGAAGAAGAACCTGTTTTCTCTAAAAGAAAAAAGTCGAGTTTTCTTGGAAATGGATGCGTGATTGATTGTTATTCTCAATTACAACAATCAAGCGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGTATGTTAA 1431 0.3871 MIWEFGFLCIGKNPSKRNLSSDYQDENGDKRMNFEHNKAWLLAESGGCGAELNNADPQSVHSSFRFSFCSQVELESLNLSSSSAATVLMVNLDNGVSESLVKELKLRRIESLEKTISPVAHSLIRFSYGEIVNATRNFSKGRVLGRGALSCVYRGRVGLLRTVVAIKQLDKEDKESAKAFCRELMIASSLHNPNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKKGGNGNSTLPWSVRYKVAIGIAEAIAYLHSGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELITGRKPIETKRSPGEENLVLWAKPYLQKGKGAIEELLDPQLKCNLRFSNQIGRMIEAAAACVTNEESRRPGINEVIAILKGEEEPVFSKRKKSSFLGNGCVIDCYSQLQQSSEMKSHLALAMLGVSEFEDDDYLYVC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01856 476 FunFam Putative receptor-like serine/threonine-protein kinase 216 434 - -
Trre5g01856 476 FunFam probable serine/threonine-protein kinase PBL7 99 215 - -
Trre5g01856 476 PANTHER OS08G0249100 PROTEIN 89 435 IPR046958 -
Trre5g01856 476 ProSiteProfiles Protein kinase domain profile. 138 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01856 476 SUPERFAMILY Protein kinase-like (PK-like) 118 419 IPR011009 -
Trre5g01856 476 Gene3D Phosphorylase Kinase; domain 1 122 215 - -
Trre5g01856 476 SMART serkin_6 138 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01856 476 Pfam Protein kinase domain 139 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01856 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Trre5g01856 476 Gene3D Transferase(Phosphotransferase) domain 1 216 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01856 Trre-Chr5 13797971 13800887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01856 124 421 Trihelix Transcription Factor Family AT1G70460 43.000 1.49e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre5g01856 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01856 - - psat:127083811 854.358