Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01855 ATGGAGGGTGAAACTGAAACCTCCACTGATATAACCAACAACATTTCCAACACACATTCATCATCTTCACTTGTTTTTTCTCACAACAAAAACATCAAAGTTAGAACCTTTTTAAGAAAAATGATCTGGGAATTTGGTTTTTTATGTATTGGAAAAAACCCTTCAAAAAGAAACTTAAGTAGTGATTACCAAGATGAAAATGGTGACAAAAGAATGAATTTTGAGCACAACAAAGCTTGGTTGTTAGCTGAGTCTGGTGGGTGTGGAGCAGAATTGAACAATGCTGATCCTCAATCTGTTCATTCTTCTTTCAGATTTAGTTTCTGTTCTCAAGTTGAGTTGGAGTCTTTGAATTTGAGTTCTTCTTCTGCTGCAACTGTTTTGATGGTGAATTTGGATAATGGGGTTAGTGAATCTCTTGTTAAAGAGTTGAAATTGAGGAGAATTGAGTCTTTGGAGAAGACTATTTCTCCTGTTGCTCACTCTTTGATTAGGTTTAGCTATGGTGAAATTGTCAATGCTACTAGGAATTTCTCCAAAGGTAGGGTATTGGGGAGAGGTGCATTGAGCTGTGTTTATAGGGGAAGAGTTGGACTTTTGAGAACTGTTGTAGCAATTAAACAGTTGGACAAAGAAGATAAGGAATCTGCAAAAGCCTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAATCCAAATGTTGTTCCACTTGTTGGGTTTTGTATCGACTCTGAGGAAGGTTTGTTTTTGGTGTACAAGTATGTCTCGGGTGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAAAGGTGGTAACGGTAATTCAACACTTCCATGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCAGAAGCTATAGCTTATCTGCATAGTGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAACCCTCTAACATTCTGCTTTCTTCTAAGAAGACTCCAAAGTTGTGTGATTTCGGATTAGCAACATGGACATCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTTAAAGGAACATTTGGATATTTGGCTCCAGAGTATTTCCAACATGGGAAAATATCCGATAAGACTGATGTTTACGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGCCGGAAACCAATTGAAACAAAAAGGTCTCCAGGAGAGGAGAATTTAGTCTTATGGGCTAAGCCTTATCTACAAAAGGGGAAAGGAGCCATTGAAGAGTTGCTTGATCCTCAACTGAAGTGCAATTTGCGATTCTCAAATCAAATCGGTAGAATGATTGAAGCAGCAGCTGCTTGTGTAACAAATGAAGAATCTAGGAGACCTGGCATAAATGAGGTTATCGCAATACTGAAAGGTGAAGAAGAACCTGTTTTCTCTAAAAGAAAAAAGTCGAGTTTTCTTGGAAATGGATGCGTGATTGATTGTTATTCTCAATTACAACAATCAAGCGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGTATGTTAA 1551 0.383 MEGETETSTDITNNISNTHSSSSLVFSHNKNIKVRTFLRKMIWEFGFLCIGKNPSKRNLSSDYQDENGDKRMNFEHNKAWLLAESGGCGAELNNADPQSVHSSFRFSFCSQVELESLNLSSSSAATVLMVNLDNGVSESLVKELKLRRIESLEKTISPVAHSLIRFSYGEIVNATRNFSKGRVLGRGALSCVYRGRVGLLRTVVAIKQLDKEDKESAKAFCRELMIASSLHNPNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKKGGNGNSTLPWSVRYKVAIGIAEAIAYLHSGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELITGRKPIETKRSPGEENLVLWAKPYLQKGKGAIEELLDPQLKCNLRFSNQIGRMIEAAAACVTNEESRRPGINEVIAILKGEEEPVFSKRKKSSFLGNGCVIDCYSQLQQSSEMKSHLALAMLGVSEFEDDDYLYVC 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01855 516 FunFam Putative receptor-like serine/threonine-protein kinase 256 474 - -
Trre5g01855 516 Pfam Protein kinase domain 179 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01855 516 FunFam probable serine/threonine-protein kinase PBL7 139 255 - -
Trre5g01855 516 Gene3D Transferase(Phosphotransferase) domain 1 256 474 - -
Trre5g01855 516 Gene3D Phosphorylase Kinase; domain 1 162 255 - -
Trre5g01855 516 ProSiteProfiles Protein kinase domain profile. 178 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01855 516 PANTHER OS08G0249100 PROTEIN 117 475 IPR046958 -
Trre5g01855 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Trre5g01855 516 SMART serkin_6 178 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01855 516 SUPERFAMILY Protein kinase-like (PK-like) 158 459 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01855 Trre-Chr5 13797851 13800887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01855 166 461 Trihelix Transcription Factor Family AT1G70460 43.289 2.80e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre5g01855 Pkinase 4.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01855 - - psat:127083811 854.358