Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01849 ATGGAGAACTTGTTGGGTCTGCTCAAAATTCATGTTCAAAGAGGTGTCAATCTTGCTATCAGAGATGTAGTTAGCAGTGATCCTTATGTTGTCATCAAAATGGGAAAACAGAAGCTGAAGACTAGGGTAGTGAGGAAGAATCTAAATCCTGAGTGGAATGATGAATTGACTTTATCCATTTCAGATCCTCATACTCCAATTCATCTACAAGTGTACGATAAGGACACATTTAGCTTGGACGACAAAATGGGGGACGCTGATTTCGACATCGGTCCATTTGTTGAAGCGGTAAAGATGCGTTTGGAAGGTCTCCCAAATGGTACTATAGTTACAAGGGTGCTACCTAGCAGACAAAATTGCTTAGCAGAAGAGAGTCACATTGTTTGTAAAGATGGCAAAGTTTCACAAAACATGGTTCTTAGACTAAGGAATGTTGAATGTGGTGAAGTGGAGCTTCAATTGCATTGGATTGACATTCCTGGTTCAAGGGGTCTTTAG 498 0.4056 MENLLGLLKIHVQRGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVRKNLNPEWNDELTLSISDPHTPIHLQVYDKDTFSLDDKMGDADFDIGPFVEAVKMRLEGLPNGTIVTRVLPSRQNCLAEESHIVCKDGKVSQNMVLRLRNVECGEVELQLHWIDIPGSRGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01849 165 Gene3D C2 domain 3 163 IPR035892 -
Trre5g01849 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Trre5g01849 165 SMART C2_3c 7 102 IPR000008 -
Trre5g01849 165 Pfam C2 domain 7 92 IPR000008 -
Trre5g01849 165 CDD C2_ArfGAP 5 148 - -
Trre5g01849 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Trre5g01849 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01849 Trre-Chr5 13735890 13737797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01849 38 165 C2H2 Transcription Factor Family AT1G70790 60.000 8.38e-52 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01849 5 13735890 13737797 Trre11g02077 11 23500971 23505047 ECH
Trre5g01849 5 13735890 13737797 Trre5g01849 5 13735890 13737797 ECH
Trre7g01934 7 15261191 15262594 Trre5g01849 5 13735890 13737797 ECH