Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01848 ATGGAAAACTTGTTGGGATTGCTCAAAATTCATGTTCAAAGAGGTGTTAATCTTGCTATCAGGGATGTAACCAGTAGTGATCCTTATGTTGTCATCAACATGGGAAAACAGAAGCTGAAGACTAAGGTTGTGAGGAAGAATCTAAATCCAGAGTGGAATAATGAATTAACATTATCAATTTCAGATACTCAAACTCCAGTCCATCTACAAGTGTACGACAAGGACAACTTTTCATTGGACGATAAAATGGGGGATGCCGAATTCGACATTCGTCCATTTGTCGAAGCAGTAAAGATGCGGTTGGAAAGTCTACCAAATGATACTATAGTTACAAAGGTGCAACCTAGCAGGCATAATTGCTTAGCAGAAGAGAGTCACATTGTTTATAAAAATGGCAAAGTTGTCCAAAATATGGTTCTTAGACTAAGAAATGTTGAACGTGGTGAAGTGGAGCTTCAATTGCATTGGATTGACATTCCTGGTTCAAGGGGTCTTTAG 498 0.3855 MENLLGLLKIHVQRGVNLAIRDVTSSDPYVVINMGKQKLKTKVVRKNLNPEWNNELTLSISDTQTPVHLQVYDKDNFSLDDKMGDAEFDIRPFVEAVKMRLESLPNDTIVTKVQPSRHNCLAEESHIVYKNGKVVQNMVLRLRNVERGEVELQLHWIDIPGSRGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01848 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Trre5g01848 165 CDD C2_ArfGAP 5 148 - -
Trre5g01848 165 Gene3D C2 domain 3 163 IPR035892 -
Trre5g01848 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Trre5g01848 165 SMART C2_3c 7 102 IPR000008 -
Trre5g01848 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Trre5g01848 165 Pfam C2 domain 7 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01848 Trre-Chr5 13732032 13734125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01848 38 165 C2H2 Transcription Factor Family AT1G70790 58.462 5.34e-53 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01848 - - pvu:PHAVU_001G230800g 278.87