Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01844 ATGAAGAGAGATCACCAAGAAAGCTATGGTGGTGGAGTGAACATAAACAACAACAACAAAAACAACAACCTCAACAACAAGAACAAAAACTTTGGTGAATGTTCATCAATGCAGAACAGCAACAACACAAACGGAAAACAAAACATGTGGAGAGAAGAAAAAGACAACGGTGGTGGAATGGATGAGTTATTAGCAGCATTAGGTTACAAAGTTCGTTCTTCAGACATGGCTGATGTAGCTCAAAAGCTTGAACAACTTGAGATGGTTATGGGTAGTGCTCAAGAAGAAGGAATAAACCATCTTTCTTCTGATACAGTTCACTATGACCCAACCGATCTATATTCATGGGTTCAAACTATGCTCACTGAACTCAACCCTTCAACCACTCATTCACAAATCAATGACCCATTAAACCCTTCTTCTTCTTCTTCTTCTTCCATCTTCAACGATGATTCTCAATATGATCTCAGCGTTATTCCTGGAATGGCCGCATACCCACCTCAAAACAACCAAATCCAAAACCAAAGCAGTGAAATTGAAGTTTCCAACAGTAACAAAAGGTTGAAAACATGGGTGGAGGAATCAGAATTGGAAGATGTTATACCGGCGTTATCACCGCCGGCGGAAACTACAAGACCGGTTGTTCTCGTTGATTCACAAGAAACCGGTGTTCGTCTTGTTCATACTTTGTTAGCTTGTGCTGAAGCGATTCAGCAAGAGAATCTGAAACTTGCTGATGCACTTGTGAAACATATCGGAGCTTTAGCATCGTCGCAAACCGGTGCGATGAGAAAAGTTGCTTCCTATTTCGCACAAGCACTTGCTCGGAGAATATACGGAATTTACCCAGATGAAACAATCGATTCATCTTTCTCCGATCTTCTTCACATGCACTTTTATGAATCTTCACCGTATCTCAAATTCGCTCATTTCACTGCAAATCAAGCTATTCTTGAAGCTTTCGCCGGCGCCGGAAGAGTCCACGTCATCGATTTCGGTCTCAAACAAGGGATGCAATGGCCGGCGCTTATGCAAGCACTTGCATTACGTCCCGGCGGTCCACCAACTTTCCGGTTAACCGGAATCGGACCGCCGCAACCCGACAACACCGATGCGTTACAACAAGTGGGTTGGAAATTGGCTCAGCTTGCACAAACAATCGGCGTTCAGTTCGAATTTCGAGGATTCGTTTGCAACAGTTTAGCGGATCTTGACCCGAATATGCTTGAGATCCGACCCGGTGAAGCTGTTGCTGTTAACTCAGTTTTCGAACTTCACACTATGTTAGCCCGACCCGGATCCGTTGATAAAGTTCTCAACACTATTAAGAAGATTAACCCTAAAATCGTAACCATCGTTGAGCAAGAAGCGAATCATAACGGACCGGTTTTCGTAGACCGGTTCACGGAGGCTCTACATTATTACTCGAGTTTATTCGACTCACTTGAAGGTTCTTGTTCTAATTCTAACTCGACCGGGTCCGGTTCGGTTAATCAGGATTTATTAATGTCGGAGGTTTATTTGGGAAGACAGATATGTAACGTGGTGGCTTATGAAGGAGTAGACCGGGTTGAGAGACATGAGACATTGAACCAGTGGCGGTCGAGAATGGGTTCAGCCGGGTTTGATCCGGTTCATTTGGGTTCTAATGCTTTTAAACAAGCGAGTACTTTGTTGGCTTTGTTCGCCGGAAGTGGTGGGTATAGGGTGGAAGAAAATAATGGGTCTCTTATGCTTGGGTGGCACACGAGGTCACTTATTGCTACTTCAGCATGGAAGCTTCCACTCAGTGAGTCCAAGTGA 1803 0.4415 MKRDHQESYGGGVNINNNNKNNNLNNKNKNFGECSSMQNSNNTNGKQNMWREEKDNGGGMDELLAALGYKVRSSDMADVAQKLEQLEMVMGSAQEEGINHLSSDTVHYDPTDLYSWVQTMLTELNPSTTHSQINDPLNPSSSSSSSIFNDDSQYDLSVIPGMAAYPPQNNQIQNQSSEIEVSNSNKRLKTWVEESELEDVIPALSPPAETTRPVVLVDSQETGVRLVHTLLACAEAIQQENLKLADALVKHIGALASSQTGAMRKVASYFAQALARRIYGIYPDETIDSSFSDLLHMHFYESSPYLKFAHFTANQAILEAFAGAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHTMLARPGSVDKVLNTIKKINPKIVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSCSNSNSTGSGSVNQDLLMSEVYLGRQICNVVAYEGVDRVERHETLNQWRSRMGSAGFDPVHLGSNAFKQASTLLALFAGSGGYRVEENNGSLMLGWHTRSLIATSAWKLPLSESK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01844 600 FunFam DELLA protein GAI 59 124 - -
Trre5g01844 600 SMART DELLA_2 61 134 - -
Trre5g01844 600 ProSiteProfiles GRAS family profile. 217 593 IPR005202 -
Trre5g01844 600 Pfam Transcriptional regulator DELLA protein N terminal 61 127 IPR021914 -
Trre5g01844 600 Coils Coil 76 96 - -
Trre5g01844 600 MobiDBLite consensus disorder prediction 127 147 - -
Trre5g01844 600 Gene3D - 59 124 IPR038088 -
Trre5g01844 600 MobiDBLite consensus disorder prediction 1 57 - -
Trre5g01844 600 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 173 589 IPR005202 -
Trre5g01844 600 MobiDBLite consensus disorder prediction 10 47 - -
Trre5g01844 600 Pfam GRAS domain family 226 593 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01844 Trre-Chr5 13689348 13691150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01844 46 594 GRAS Transcription Factor Family AT1G14920 62.523 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre5g01844 GRAS 3.3e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01844 K14494 - gmx:100799695 868.226