Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01795 ATGGCTTCTTCCTTGGACATGTCACTGGATGATAGAATTAAGAACAACAGGAGTATCAGAGGCAGAGGTAGAGGTCGTGGCAAAGCCGTTGCTGGCCGTGGAAGTGGGACTGTAGGTGGTGGAAGAAGGGCTGGTGCTGTTAATGGGAGAAGAGTGACTGGTAATGGTGGAAGAACAACCGGCGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGGCAAGCTCAAAAAACTCTATTCGCAGAACCAAGGCTTTTCCATGGCAGAACGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATACAAGGAGTTGAAGTTGACACAAAGTTGTATGTTTCCAACTTAGACCGAGGAGTTACAAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGGGACTTGAAGCGCTATGCTGTTCATTATGACAAGAATGGACACCCAACTGGTTCAGCTGAAGTTGTCTACAATAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAATAATGTGCTTTTGGATGGAAAGCCAATGAAGATCGAGATTGTTGGAACAAATTCAGAATTGCCTGTAACTGCAAGGGTGAATGTCTCTGCGATGAATGGACAGAGAAAGAGGACAGTTGTGATGGCGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCCTTGCTAAATCGTGGTGCTGGCTGGGGACGCCGCGGTGGCTCAAGGGGTGGTACTGGTACTGTGCGTGGCAGAGGCCGAGGCCGCTCTGGCAGGGGTGGAGGTCGAGGTCGTGGAAGAAAGGATGGAGTTGAGAAGTCAGCTGAGCAGCTTGACAAGGAATTGGAGACCTATCATGCAGAGGCCATGAACATCTCATAA 888 0.4887 MASSLDMSLDDRIKNNRSIRGRGRGRGKAVAGRGSGTVGGGRRAGAVNGRRVTGNGGRTTGAVRRGPLMVNTRPSSYAIAKASSKNSIRRTKAFPWQNDLFEDSLRAAGIQGVEVDTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMAPRGGRGGGPALLNRGAGWGRRGGSRGGTGTVRGRGRGRSGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01795 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Trre5g01795 295 MobiDBLite consensus disorder prediction 264 279 - -
Trre5g01795 295 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 292 - -
Trre5g01795 295 Coils Coil 270 295 - -
Trre5g01795 295 SMART rrm1_1 118 190 IPR000504 GO:0003723
Trre5g01795 295 SUPERFAMILY RNA-binding domain, RBD 111 191 IPR035979 GO:0003676
Trre5g01795 295 Pfam C-terminal duplication domain of Friend of PRMT1 237 289 IPR025715 -
Trre5g01795 295 SMART FoP_duplication_2 222 295 IPR025715 -
Trre5g01795 295 Gene3D - 112 193 IPR012677 -
Trre5g01795 295 MobiDBLite consensus disorder prediction 1 65 - -
Trre5g01795 295 CDD RRM_THOC4 117 191 - -
Trre5g01795 295 MobiDBLite consensus disorder prediction 219 279 - -
Trre5g01795 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01795 Trre-Chr5 13323247 13326674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01795 119 191 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 1.61e-08 53.5