Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01794 ATGGCTTCTTCCTTGGACATGTCACTGGATGATAGAATTAAGAACAACAGGAGTATCAGAGGCAGAGGTAGAGGTCGTGGCAAAGCCGTTGCTGGCCGTGGAAGTGGGACTGTAGGTGGTGGAAGAAGGGCTGGTGCTGTTAATGGGAGAAGAGTGACTGGTAATGGTGGAAGAACAACCGGCGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGGCTTTTCCATGGCAGAACGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATACAAGGAGTTGAAGTTGACACAAAGTTGTATGTTTCCAACTTAGACCGAGGAGTTACAAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGGGACTTGAAGCGCTATGCTGTTCATTATGACAAGAATGGACACCCAACTGGTTCAGCTGAAGTTGTCTACAATAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAATAATGTGCTTTTGGATGGAAAGCCAATGAAGATCGAGATTGTTGGAACAAATTCAGAATTGCCTGTAACTGCAAGGGTGAATGTCTCTGCGATGAATGGACAGAGAAAGAGGACAGTTGTGATGGCGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCCTTGCTAAATCGTGGTGCTGGCTGGGGACGCCGCGGTGGCTCAAGGGGTGGTACTGGTACTGTGCGTGGCAGAGGCCGAGGCCGCTCTGGCAGGGGTGGAGGTCGAGGTCGTGGAAGAAAGGATGGAGTTGAGAAGTCAGCTGAGCAGCTTGACAAGGAATTGGAGACCTATCATGCAGAGGCCATGAACATCTCATAA 873 0.4903 MASSLDMSLDDRIKNNRSIRGRGRGRGKAVAGRGSGTVGGGRRAGAVNGRRVTGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTKAFPWQNDLFEDSLRAAGIQGVEVDTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMAPRGGRGGGPALLNRGAGWGRRGGSRGGTGTVRGRGRGRSGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS 290
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01794 290 SMART FoP_duplication_2 217 290 IPR025715 -
Trre5g01794 290 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 287 - -
Trre5g01794 290 SMART rrm1_1 113 185 IPR000504 GO:0003723
Trre5g01794 290 MobiDBLite consensus disorder prediction 1 65 - -
Trre5g01794 290 MobiDBLite consensus disorder prediction 214 271 - -
Trre5g01794 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Trre5g01794 290 Coils Coil 265 285 - -
Trre5g01794 290 SUPERFAMILY RNA-binding domain, RBD 106 186 IPR035979 GO:0003676
Trre5g01794 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Trre5g01794 290 Pfam C-terminal duplication domain of Friend of PRMT1 232 284 IPR025715 -
Trre5g01794 290 Gene3D - 107 188 IPR012677 -
Trre5g01794 290 CDD RRM_THOC4 112 186 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre5g01794 Trre-Chr5 13323247 13326674 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01794 114 186 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 1.57e-08 53.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01794 K12881 - gmx:100801491 353.599