Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g01794 | ATGGCTTCTTCCTTGGACATGTCACTGGATGATAGAATTAAGAACAACAGGAGTATCAGAGGCAGAGGTAGAGGTCGTGGCAAAGCCGTTGCTGGCCGTGGAAGTGGGACTGTAGGTGGTGGAAGAAGGGCTGGTGCTGTTAATGGGAGAAGAGTGACTGGTAATGGTGGAAGAACAACCGGCGCTGTTCGTAGAGGCCCACTTATGGTCAACACTCGCCCATCATCTTATGCTATTGCCAAGTCTATTCGCAGAACCAAGGCTTTTCCATGGCAGAACGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATACAAGGAGTTGAAGTTGACACAAAGTTGTATGTTTCCAACTTAGACCGAGGAGTTACAAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGGGACTTGAAGCGCTATGCTGTTCATTATGACAAGAATGGACACCCAACTGGTTCAGCTGAAGTTGTCTACAATAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATACAATAATGTGCTTTTGGATGGAAAGCCAATGAAGATCGAGATTGTTGGAACAAATTCAGAATTGCCTGTAACTGCAAGGGTGAATGTCTCTGCGATGAATGGACAGAGAAAGAGGACAGTTGTGATGGCGCCTAGAGGTGGTCGAGGTGGAGGTCCTGCCTTGCTAAATCGTGGTGCTGGCTGGGGACGCCGCGGTGGCTCAAGGGGTGGTACTGGTACTGTGCGTGGCAGAGGCCGAGGCCGCTCTGGCAGGGGTGGAGGTCGAGGTCGTGGAAGAAAGGATGGAGTTGAGAAGTCAGCTGAGCAGCTTGACAAGGAATTGGAGACCTATCATGCAGAGGCCATGAACATCTCATAA | 873 | 0.4903 | MASSLDMSLDDRIKNNRSIRGRGRGRGKAVAGRGSGTVGGGRRAGAVNGRRVTGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTKAFPWQNDLFEDSLRAAGIQGVEVDTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMAPRGGRGGGPALLNRGAGWGRRGGSRGGTGTVRGRGRGRSGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMNIS | 290 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g01794 | 290 | SMART | FoP_duplication_2 | 217 | 290 | IPR025715 | - | |
Trre5g01794 | 290 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 5 | 287 | - | - | |
Trre5g01794 | 290 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 | |
Trre5g01794 | 290 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Trre5g01794 | 290 | MobiDBLite | consensus disorder prediction | 214 | 271 | - | - | |
Trre5g01794 | 290 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 182 | IPR000504 | GO:0003723 | |
Trre5g01794 | 290 | Coils | Coil | 265 | 285 | - | - | |
Trre5g01794 | 290 | SUPERFAMILY | RNA-binding domain, RBD | 106 | 186 | IPR035979 | GO:0003676 | |
Trre5g01794 | 290 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 189 | IPR000504 | GO:0003723 | |
Trre5g01794 | 290 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 232 | 284 | IPR025715 | - | |
Trre5g01794 | 290 | Gene3D | - | 107 | 188 | IPR012677 | - | |
Trre5g01794 | 290 | CDD | RRM_THOC4 | 112 | 186 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g01794 | Trre-Chr5 | 13323247 | 13326674 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g01794 | 114 | 186 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 38.356 | 1.57e-08 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g01794 | K12881 | - | gmx:100801491 | 353.599 |