Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01785 ATGATGTCAAGTTCAAGAGATGGTAATTATGAAGCAAAAGAAGGAGATGACAATAATATGAGTATATTGGAAAAAATATCCAAGACACCTGCAAGTACTTCAAGACAATGGTCAAGTTCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGCACAATAAGAGGTTTAAGAGATAGAAGGATTAGGCTTTCCGTTCCGACCGCAATTCAATTGTATGATCTTCAAGATAAACTTGGTTTAGGACAACCAAGTAAAGTTATTGATTGGTTACTTGAAGCAACAAAATTTGATATTGATAAACTTCCACCACTTCAATTTCCTCAAAGCTTTTCACAATTTCATCATCTTCATCCACAAACCCTACTTCCTTTTCATGATCATCAATCAAGTAATGTCTTATCTCATGAACTTTCTCTTGGTCCTAATTTATATGATCCTAATTCCACATTTGTTGGAATTCAAAATCTTATGGCAAGGTCAAAATTTTGGGACATTGATTCAAGGATTAATAAAGGTAAAGAAGTTGAAAGAGAGTACTTTGGTGATAAAGGTAAGTGGATTAAAACAAATGATGATGAAAATCAAGGTGGAGGAGAAACTAGTTACAACAATTTTCATCAAGTTTCAACTCAAAAGCTTTTCCCTATGGAGACTCATCACTCTAATTTTCTAAACAATGCTATGCCATATAACAACTATCATTCAGAAGCTTCTAATTTGTCTTTATCTCAATTTGGAACTAGTCATGGAATGTTCCAATCTCATCAACAAGTAGATCCTAATCAAAATAGTGGAAATGCTTTGCAATTTCCATTTTCTTTACCAAATTCACAATTATTTTTTGGTCCTTCTTCATCTTCTACTACACCACCATCATCATCACTTCTGAATCCTTTTATGAACAATTCAGTTGAAAATGATCCAAGAGTACAATTCAATCATTTTCAGTTCATAAACTCAAGTTCTTCTCATCCTATGCCTCATCCTCTTATTCCATCTTTTCATCACTCATTCAATTCACCTCCAATTAGGCCTTTTCCATTACCATTTAGCTCCAAACTTCTAGATTCGGATAACAATAACAACGGTAACCAACCGGATAATAAGGGTAGTCGTGATCGTTCTTGA 1167 0.3376 MMSSSRDGNYEAKEGDDNNMSILEKISKTPASTSRQWSSSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLQFPQSFSQFHHLHPQTLLPFHDHQSSNVLSHELSLGPNLYDPNSTFVGIQNLMARSKFWDIDSRINKGKEVEREYFGDKGKWIKTNDDENQGGGETSYNNFHQVSTQKLFPMETHHSNFLNNAMPYNNYHSEASNLSLSQFGTSHGMFQSHQQVDPNQNSGNALQFPFSLPNSQLFFGPSSSSTTPPSSSLLNPFMNNSVENDPRVQFNHFQFINSSSSHPMPHPLIPSFHHSFNSPPIRPFPLPFSSKLLDSDNNNNGNQPDNKGSRDRS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01785 388 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g01785 388 Pfam TCP family transcription factor 56 124 IPR017887 -
Trre5g01785 388 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 307 IPR005333 GO:0003700
Trre5g01785 388 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Trre5g01785 388 MobiDBLite consensus disorder prediction 362 388 - -
Trre5g01785 388 MobiDBLite consensus disorder prediction 366 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01785 Trre-Chr5 13234957 13236123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01785 39 380 TCP Transcription Factor Family AT5G60970 38.378 4.61e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre5g01785 TCP 1.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01785 - - cam:101498052 540.421