Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01771 ATGGCAGTTCAAAGCTCCACTTCCAGTAAACCACAACCTTCCAACAACGTTTCTCACGACCATTTCTTTGTATGGAGGGAGTTTGTATGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATGATGCATCCGGTAGATACCATCAAAACTCGAATACAAAGTCAAGCCATTCTAAATGGTGTTAAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTTGACGGATTAAGAGGCTTTTACAGGGGCGTAATGCCTGGTGTTACTGGGTCTCTGGCGACTGGTGCAACATATTTTGGTGTCATAGAGTCCACTAAAAAGTGGATTGAGGATTCACATCCTGGCCTTGGTGGCCATTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGTTCTGTGGTATATGTTCCATGCGAAGTGATAAAGCAGCGCATGCAAGTTCAAGGCACAATTACATCCTGGAGTTCAACTGCAATGAAGAATGGCATTGCAATAAAACCTGGTGCAGAAATATATGACTATTATAAAGGAATGTTCCATGCAGGCTGCTCAATATGGAGAACACAGGGCTTCAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTTCCATTTGCTGGCCTGATGGTTGTATTCTATGAAGCTTTGAAAGATGTCACAGAGTTTGGGAAGCAAAGATGGGTATCTAACCCAAAATGGCATGTTAATAATTCATTTGAGGGACTGGTTTTAGGAGGATTAGCTGGTGGTCTCAGTGCATATCTTACCACTCCTTTGGATGTCGTCAAAACTAGGCTGCAAGTTCAGGGTTCAACTTTTAGGTATAATGGTTGGTTGGATGCAATGTACAATATATGGGCTAAGGAAGGCATGAAGGGGATGTTTAGGGGTAGCATTCCCAGAATTGCGTGGTACATTCCGGCTTCAGCGCTTACATTCATGGCTGTGGAATTTCTCCGAGAAAATTTTAATGAAAGAGCGCCTAATGGTGATTTGAGAGATGTTGCCAAATTATCAGTTGAAAAGAAGAAATCTCTGCAGGAGGCTACTTAA 1077 0.4364 MAVQSSTSSKPQPSNNVSHDHFFVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVKNQKGILQMVRSVWKVDGLRGFYRGVMPGVTGSLATGATYFGVIESTKKWIEDSHPGLGGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWSSTAMKNGIAIKPGAEIYDYYKGMFHAGCSIWRTQGFKGLYAGYLSTLARDVPFAGLMVVFYEALKDVTEFGKQRWVSNPKWHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTFRYNGWLDAMYNIWAKEGMKGMFRGSIPRIAWYIPASALTFMAVEFLRENFNERAPNGDLRDVAKLSVEKKKSLQEAT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01771 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Trre5g01771 358 SUPERFAMILY Mitochondrial carrier 21 327 IPR023395 -
Trre5g01771 358 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 335 - -
Trre5g01771 358 FunFam Mitochondrial substrate carrier family protein 6 166 - -
Trre5g01771 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Trre5g01771 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Trre5g01771 358 FunFam Mitochondrial substrate carrier family protein 168 347 - -
Trre5g01771 358 Gene3D Mitochondrial carrier domain 172 348 IPR023395 -
Trre5g01771 358 Gene3D Mitochondrial carrier domain 2 171 IPR023395 -
Trre5g01771 358 Pfam Mitochondrial carrier protein 23 114 IPR018108 -
Trre5g01771 358 Pfam Mitochondrial carrier protein 246 333 IPR018108 -
Trre5g01771 358 Pfam Mitochondrial carrier protein 122 227 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01771 Trre-Chr5 13100603 13105444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01771 113 337 Chloroplast and Mitochondria Gene Families AT1G07030 25.333 2.72e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01771 - - gmx:100790921 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01771 5 13100603 13105444 Trre5g01771 5 13100603 13105444 ECH