Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01765 ATGCATGGTCAAGTTCACAAACACAAGATTGAACCTTGTGATATATGTGGAGATGTTGGTTTTGATGACTTTATTGTAACTTGCTCTAAATGCAAAGTAACTCGTGAACATGTTTACTGCATGCGAATTAATCTCATGAAGATTCCAGATTTTTGGCTTTGTGAAAAATGTGAACCAAATAGTGGTGACAACAATGTTAGAAAAGGTGTGGATGAAGTCATTAAACTACCACTGCAAGAAAAAGAAAATGTCAGATTTGCTGCCACCATTTCACTACAAACTGTATCTGTGGTTAATTTCAAGTTACAAAAGCGATTTTTAACTACAAAAGGTGTGCAGGGTGAGGATTTAGCTTGGACGAATTAG 366 0.3579 MHGQVHKHKIEPCDICGDVGFDDFIVTCSKCKVTREHVYCMRINLMKIPDFWLCEKCEPNSGDNNVRKGVDEVIKLPLQEKENVRFAATISLQTVSVVNFKLQKRFLTTKGVQGEDLAWTN 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01765 121 SUPERFAMILY FYVE/PHD zinc finger 10 62 IPR011011 -
Trre5g01765 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
Trre5g01765 121 SMART PHD_3 12 58 IPR001965 -
Trre5g01765 121 Pfam PHD-finger 13 59 IPR019787 -
Trre5g01765 121 PANTHER - 11 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01765 Trre-Chr5 13032923 13037768 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g01765 PHD 3.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01765 - - psat:127085498 92.0485