Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01754 ATGGGAAGGTTCCAACAAACCCTTCTCCCTCGTATCAACAAATGCAAATCAAAATTCTCAACCGCCGATGAAATCGTCCATCATCTCCGTTCAACATACTCCGATTACCACCGCATCAAGTATCAAACACTCCTTTACTATGTTAACAATGCTCTTCCTTCTTCTAACAACTACAATGCCACCGGAGTAGTACACAAACAAATCGAAGCAGCTAGTTCTGAATTAACGAAACTTTCCCTTTCGGAAAACAACGACGATCCTAAAAAGGTTAAGAATGTTCTGAAGAGTCCAATGTTCAAGGATTTAGGTGGAAATGGAATGGAGAAGATAAAGAATGAATTGGAAGCACCTCTTATGTTAGTATGTCAACCTAAGTTGTGTAGAGAATTTGGATTGAAACCAATTACTGGAATTTTGTTGCATGGTCCTCCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATTGCTAATGAAGTTGAACTTCCTTTTTATCCTATTTCTGCTACTCATGTTGTTAGTGGAAATGCTGGCGAATCTGAAAATAATATTAGAGAGCTTTTCTCTAAAGCGAAAAAGACTGCTCCATCAATTATCTTTATTGATGAGATTGATGCAATTGCTATGAGAGGAGATAATTCACAGCGACAGATGGAGACACGAATTGTGACGCAGTTATTAACTTGCATGGATGAAGCTTGTAGTAGTTCAGGGAGTTCTGATGAACCTACTGGTTATGTTCTTGTAATTGGAGACACAAATAGACTTGATGCTATTGACTCTGCTTTGAGAAGGCCTGGTCGCTTTGCTCTTGAGATTGATATTGGCATTCCCGACGAATCTGCCAGGGAGGCGATACTTTTCGTGCATACTCGAAATTGCAGTGACAAGCTTGACAGTTCTGTTGATCTGCAAAAATTAGCTAGGTCTACGCCGGGATTTGTTGGTGCTGATTTGGAAGCTCTAGTTGGCAAAGCTGGCGAACGGGCATTGGAGAGGGTAATTGATGAAAGGAAACACGAATTATCTAAAGATCTCATGAGTGAAACTAATGCCGGCAGGTGGAAGAAACCTTGGTTGCCTCAAGAAATAAACAGATTTGCGATCAAAATGACTGATTTTGAGGAAGCAGTCAAAATGGCACAACCTTCGTTAACAAGAGAAGGATTCTCTCCCATTCCTGATGTTAAATGGGAAGACGTTGGTGCGCTTGATCATGTAAGAGAGGAGTTTGTTCAACACATTGTAAAGCGCATAAAAAACCCCGACGTTTATGAGGGACTTGGGTTGGATCGTGATACGGGATTTTTGCTTTACGGGCCTCCAGGCTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCGGGAGCTAATTTCATTTATATTAAGGGTCCTGAGCTTCTAAATAAATTTGTTGGAGAAAGCGAGCGTGAAGTCCGGAAATTATTTTATCGTGCAAGGGCATGTGCACCATGTATACTTTTTTTTGACGAGGTGGATTCTTTGACAACAACAGAACATGGAAATGAAGGTGGACGGGTTATTGATGGAATACGGAAACAGTTGCAGATTGAGTTAGATGGCGCAGAGCAACGCAAAGGCGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATCGACAATGCTCTCCTACGTCCTGGTAGATTTGGCAATCATATTTATATCCCTGTTCCAAGCTCAGACGGTCGTGTCTCTATATTGAAAGCTCTTGCAATGCATAAGGAAGCTCTTGCAAAACGTATGGAAAACCGTGCAAGGTTTAAGCTTATGCCTGTTGATGCCAATGTGGATTTGAGCTCCATTGCAAGATTGAAAGCTTGTGAAAACTTTAGTGCTGCCGATCTTGCTGCATTGATGGACAAAGCAATGTTGGCTGCTCTCGAAGAGAAGCTGACCACAACGGAGAAAAAAAGTGATACATTGACCGTCAAGTCAAGGCATTTTGAGGTTGCGCTAAGCAAAGTCTCCCCCTCTGTGTCAGAAAAGCAAATGGAATACTATGAGCATATTTCGAAGCTCCTTAAAGCCGCATGA 2061 0.4197 MGRFQQTLLPRINKCKSKFSTADEIVHHLRSTYSDYHRIKYQTLLYYVNNALPSSNNYNATGVVHKQIEAASSELTKLSLSENNDDPKKVKNVLKSPMFKDLGGNGMEKIKNELEAPLMLVCQPKLCREFGLKPITGILLHGPPGCGKTRLAHAIANEVELPFYPISATHVVSGNAGESENNIRELFSKAKKTAPSIIFIDEIDAIAMRGDNSQRQMETRIVTQLLTCMDEACSSSGSSDEPTGYVLVIGDTNRLDAIDSALRRPGRFALEIDIGIPDESAREAILFVHTRNCSDKLDSSVDLQKLARSTPGFVGADLEALVGKAGERALERVIDERKHELSKDLMSETNAGRWKKPWLPQEINRFAIKMTDFEEAVKMAQPSLTREGFSPIPDVKWEDVGALDHVREEFVQHIVKRIKNPDVYEGLGLDRDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKFVGESEREVRKLFYRARACAPCILFFDEVDSLTTTEHGNEGGRVIDGIRKQLQIELDGAEQRKGVFVIGATNRPEVIDNALLRPGRFGNHIYIPVPSSDGRVSILKALAMHKEALAKRMENRARFKLMPVDANVDLSSIARLKACENFSAADLAALMDKAMLAALEEKLTTTEKKSDTLTVKSRHFEVALSKVSPSVSEKQMEYYEHISKLLKAA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01754 686 ProSitePatterns AAA-protein family signature. 536 554 IPR003960 GO:0005524|GO:0016887
Trre5g01754 686 Coils Coil 633 653 - -
Trre5g01754 686 FunFam Ribosome biogenesis ATPase RIX7 87 275 - -
Trre5g01754 686 PANTHER AAA-FAMILY ATPASE 61 682 - -
Trre5g01754 686 Pfam AAA+ lid domain 604 645 IPR041569 -
Trre5g01754 686 Pfam AAA+ lid domain 300 336 IPR041569 -
Trre5g01754 686 Gene3D - 567 662 - -
Trre5g01754 686 SMART AAA_5 431 568 IPR003593 GO:0016887
Trre5g01754 686 SMART AAA_5 134 278 IPR003593 GO:0016887
Trre5g01754 686 Gene3D - 393 677 IPR027417 -
Trre5g01754 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 683 IPR027417 -
Trre5g01754 686 Pfam ATPase family associated with various cellular activities (AAA) 436 565 IPR003959 GO:0005524|GO:0016887
Trre5g01754 686 Pfam ATPase family associated with various cellular activities (AAA) 138 275 IPR003959 GO:0005524|GO:0016887
Trre5g01754 686 Gene3D - 277 387 - -
Trre5g01754 686 Gene3D - 81 275 IPR027417 -
Trre5g01754 686 FunFam ATPase, AAA family protein 393 572 - -
Trre5g01754 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 377 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01754 Trre-Chr5 12888765 12893645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01754 130 667 Calmodulin-binding Proteins AT3G56690 35.364 1.60e-106 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01754 K14571 - gmx:100809594 701.819