Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01752 ATGGGAAAGTTCCAAATAACGCTTCTTCGTCGAATCGATTCCTGCAAATCAAATTTCTCAACCGCCGATGAAATCGTCAACCATCTCCGTTCAACTTACTCCGATTACCACCATAACGATTATCAATCACTCCTTCAGTTAGTTACGAATGCTCTTCCTGCTACTCACACCGCCACCAACAACAACAACAACAATCGAAAGAGACTTCATGAATCTCAAACTTCTACTTCCCCTGATTTTGCTCCCGACAGCGGCGTCGAGAAAGCTGTTAACACCGGCGGTGAGAAAGAAGCTTCTAAAACTTCTCCAAAGAGACATAAGATTGATGAATTTGAATCTGAAGATGATTATGATTATGATGATTTTGACGATGATGATGATGATGAAAGAAATCAAAATGTGAAATCAACGAGCATGGGAACTTCGTCTGAGTATTCTTCCGGAGACAAAGTAGTGTCAAAGACAGAAATGAAACGGACACAACCGTTTCAGTTAATGCAGTTTTCGACAGGTGGCGACGGTGTCGGTGTCAGTGGTGGTGATGGAAAGAAGAAAATGATGGGGACTATGTTTAAGGATTTAGTTGGAAATGAAATGAAGAAGATAATTAAGGAATTGAAGATAACTGTTAAATTATTGCGTCAACCTGAATTGATTAGTGACTTTGGAATGAAACCTAAAAGAGGAATTTTGTTACATGGTCCACCTGGTTGTGGAAAAACTAGACTTGCTCATGCTATTGCTAATGAGGCTCAAGTTCCTTTTTATCCTATTTCTGCCACTGATTTTGTTACTGGTGGTGTCACTGGCGGATCTGAAGAAAAGATTAGAGAGCTTTTCTCTAAAGCAAAAAGGACGGCTCCATCAATCATCTTTATTGATGAGATTGATGCAATTGCTTCAAAACGAGAGGATTTAAAGAAACAGGTGGAGTCTCGAATTGTGACACAGTTATTAACTTACATTGATGGAGCTGGTTATTCAGGGAGTTCTGATGAACCTACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTCGATGCTGTTGACCCTGCTTTGAGAAGGCCTGGTCGTTTTGATCGTGAAATTCTTGTTGGCATTCCTGATGAATCTTCCAGGGAGGAGATCCTTATCATGCATACTTCAAATTGCAGTCATAAGCTTGACGATTCGATTGATCTGCGAAAAATAGCCAGGTCCACGCCAGGATTTGTTGGTGCTGATTTAGAAGCTCTTGTTGGTGAAGTTAGCGAACTGGCATTTCAGAGGGTAATAGATGAAATGGAACGTGAATCGTCTAAGGATGAAGGCCGGTGGAAGGAACATTGGTCGCCTCAACAAAAAAATAAATTTGCAATCAAAATGTCTGATTTTGAGGAAGCCGCCAAAATGGTGCAACCTTCATTAACAAGAGAAGGATTCTCTCCCATTCCTGATGTTAAATGGGAAGATGTTGGTGCACTTGATCATGTAAGAGAGGAGTTTGATCAACACATTCTAAAGCGCATAAAAGACCCCGACATTTATGAGGGACTTGGGTTGAATTGTGACACCGGGTTTTTGCTTTACGGACCTCCAGGATGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAATTTCATTTACATTAAGGGTCCCGAGCTTCTAAATAAATATGTTGGAGAAAGCGAGCGTGCTGTCCGGAAATTATTTGATCGTGCAAGAGCATGTGTACCATGTATACTTTTTTTTGACGAGGTGGATGCTTTGACAACAAAACATGGTAATGAAGGATGTACACTGGTTATTGAACGAGTGCTCAAACAGTTGCTTATTGAGTTGGACGGTGCAGAGCAACGCAAAGGTGTTTTCGTGATTAGTGCAACAAATAGGCCTGAGGTGATTGATAGTGCCCTCCTACGACCGGGTAGATTTGGTAATCTTATTTATATTCCTCTTCCAAGTCCAGATGATCGTGTTTCAATATTGAAAGCTCTTGCAAGGGGTAAGGAAACGCTTGCAAGGCGTAAGCAAACTCATGCAAGGTTTAATCTTATGCCTATTGATGCCAGTGTGGATTTGAGTGCGATTGCAAGAATGAGTGCTTGTGAAAACTTTAGTGGTGCTGATCTTGCTGAATTGATGGACAAAGCAATATTGGCTGCTCTCAAAGAGAAGCGGACCAAAACCGGAAAAAAAAGTGATACATTGACTGTCAAGGCTAGGCATTTTGAGGTAGCACTAAGTAAAGTCTCTCCCTCTGTGTCGGAAGAGCAAAGGAAGTACTATCAGCAACTTTCAAAGAACCTTAAAGCAGCATGA 2319 0.4131 MGKFQITLLRRIDSCKSNFSTADEIVNHLRSTYSDYHHNDYQSLLQLVTNALPATHTATNNNNNNRKRLHESQTSTSPDFAPDSGVEKAVNTGGEKEASKTSPKRHKIDEFESEDDYDYDDFDDDDDDERNQNVKSTSMGTSSEYSSGDKVVSKTEMKRTQPFQLMQFSTGGDGVGVSGGDGKKKMMGTMFKDLVGNEMKKIIKELKITVKLLRQPELISDFGMKPKRGILLHGPPGCGKTRLAHAIANEAQVPFYPISATDFVTGGVTGGSEEKIRELFSKAKRTAPSIIFIDEIDAIASKREDLKKQVESRIVTQLLTYIDGAGYSGSSDEPTGYVLVIGATNRLDAVDPALRRPGRFDREILVGIPDESSREEILIMHTSNCSHKLDDSIDLRKIARSTPGFVGADLEALVGEVSELAFQRVIDEMERESSKDEGRWKEHWSPQQKNKFAIKMSDFEEAAKMVQPSLTREGFSPIPDVKWEDVGALDHVREEFDQHILKRIKDPDIYEGLGLNCDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKYVGESERAVRKLFDRARACVPCILFFDEVDALTTKHGNEGCTLVIERVLKQLLIELDGAEQRKGVFVISATNRPEVIDSALLRPGRFGNLIYIPLPSPDDRVSILKALARGKETLARRKQTHARFNLMPIDASVDLSAIARMSACENFSGADLAELMDKAILAALKEKRTKTGKKSDTLTVKARHFEVALSKVSPSVSEEQRKYYQQLSKNLKAA 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01752 772 Pfam ATPase family associated with various cellular activities (AAA) 230 366 IPR003959 GO:0005524|GO:0016887
Trre5g01752 772 Pfam ATPase family associated with various cellular activities (AAA) 522 652 IPR003959 GO:0005524|GO:0016887
Trre5g01752 772 MobiDBLite consensus disorder prediction 55 154 - -
Trre5g01752 772 Gene3D - 181 367 IPR027417 -
Trre5g01752 772 MobiDBLite consensus disorder prediction 134 150 - -
Trre5g01752 772 ProSitePatterns AAA-protein family signature. 338 356 IPR003960 GO:0005524|GO:0016887
Trre5g01752 772 MobiDBLite consensus disorder prediction 98 112 - -
Trre5g01752 772 FunFam Ribosome biogenesis ATPase RIX7 181 367 - -
Trre5g01752 772 Gene3D - 369 473 - -
Trre5g01752 772 MobiDBLite consensus disorder prediction 55 81 - -
Trre5g01752 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 464 IPR027417 -
Trre5g01752 772 ProSitePatterns AAA-protein family signature. 622 640 IPR003960 GO:0005524|GO:0016887
Trre5g01752 772 PANTHER AAA-FAMILY ATPASE 392 770 - -
Trre5g01752 772 SMART AAA_5 517 654 IPR003593 GO:0016887
Trre5g01752 772 SMART AAA_5 226 370 IPR003593 GO:0016887
Trre5g01752 772 Pfam AAA+ lid domain 690 743 IPR041569 -
Trre5g01752 772 Pfam AAA+ lid domain 392 432 IPR041569 -
Trre5g01752 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 768 IPR027417 -
Trre5g01752 772 Gene3D - 479 763 IPR027417 -
Trre5g01752 772 FunFam ATPase, AAA family protein 479 658 - -
Trre5g01752 772 MobiDBLite consensus disorder prediction 113 128 - -
Trre5g01752 772 Gene3D - 653 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01752 Trre-Chr5 12859160 12866873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01752 447 753 Calmodulin-binding Proteins AT3G56690 40.777 6.97e-65 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01752 K14571 - gmx:100809594 756.903