Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01747 ATGGAAGAAGATCAAGAAGTGATTAAACATGTTTGCAAAATCTGCAGCAAGAGTTTTTCTTGTGGTAGATCATTAGGTGGTCACATGAGATCACATGATCATCTAAAAATCAATGATCATCATGATCATGATGATGATGATGGTGATGATGATGATGAGTTTGTTGTTGATGCTGCTGCAACAACAATGAAGAAAGAACAAGTTTGTTCTGAAGGGTATTATGGTCTTAGAGAAAATCCCAAGAAAACTTGGAGAGTACTCAATGATTCAACTATTGATGAAGATTCAACTTTTGATGTTGTTTTGGATAAATTGTGCAAAGAATGTGGTAAAGGTTTTCAATCTATGAAAGCTTTGTTTGGTCATATGAAGTGTCATTCGGATAAAGAACGAGTTTCGAGTAATAAGAAGAAGAATCGTAGTTTTGAATTTGATGATGAACAAGAAGAATCTAATCCAACTGTTCTTCCTAATAGAAAGAGAAGATCCAAAAGAAGATTAAGAACAAGGTACATAAATAGTGGTAACACTTCTTCTTCTGTTGTGAATTTTGTTGCAAATTCTTTAGTTTCAAGTTCTGTTTCTGATGAAGAAAAAGAACAAGAAGAGGTTGCTTTGAGTTTGATTATGCTTAGTAGAGATGTTAGACCTTGGTGTGGTCTCAAACTCAATTCTATTGCTGAATTTTCTAATAATAATGATGATGATAATGGTGATGATGATGATGATGATAACAACTCTTTGGAATTAGAAGTTCCATTAACTCATTTAGTTTCTAAGATTGAAGAGAAAAAAAGGGTTATCTCAAATGGTTCTGAAATTGTTAAAGTGACCAAAAAACCAAAGAAGTTGGATTTTGGCAATAGTGTTTCTACAAATCTGAATTCCAAAGGGAAAAGTTTGGAAATTTTTGCTGATGAGAGTGAAGGAAATGATGATGGATTGAAGATGAAGAAAACTAAGAAAACTAGAGTTTCTGTTACTGAGAATGGAAAGGATGATGATAAGAAGGAAAAGATGGAGATTGAGGTTGATTCTGATTCAGCATTTGAGGTCAATGTAAGATCAAAATCAGGTACTAACAATCCTACAAAGTACACTTCATTGAAGGAAAAGTTTTTTGATTCTGAAACTAAGGTTACCCTTACATCAGAAGGTGAATCAAGCAAGAAAAAATATAATAAGAGAGGAAAATTTGAGTGTGCTACTTGCAACAAAATTTTCCAATCTTATCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAGAACAAAAGGGTGTAATTCTTCAAGAATTGATCAAAGTAGTGAAAATGAAAACATTGCTGAATTGGAATTGGAAGTGGAAGTAGATGTGAAGATCAATGTTAATGCTGAGGGAAGAAGCATAGAAAGTGAAAGAGTTTTGCTTGAGGAAGAAGTTCCTGAAATAAGAAACTTCCTTGATCTTAATCTTCCTGCTACTGCTGCAAGTATTGATGAAGAAAGAAATGGTCATTCTGAGATTTACAAATCATGGTGGTTAGTTGGAGGCAGCAGCAGCCTCAAGCAAGAGACAATGGCAGTAGGCCTACTGTCGAACTAG 1584 0.3415 MEEDQEVIKHVCKICSKSFSCGRSLGGHMRSHDHLKINDHHDHDDDDGDDDDEFVVDAAATTMKKEQVCSEGYYGLRENPKKTWRVLNDSTIDEDSTFDVVLDKLCKECGKGFQSMKALFGHMKCHSDKERVSSNKKKNRSFEFDDEQEESNPTVLPNRKRRSKRRLRTRYINSGNTSSSVVNFVANSLVSSSVSDEEKEQEEVALSLIMLSRDVRPWCGLKLNSIAEFSNNNDDDNGDDDDDDNNSLELEVPLTHLVSKIEEKKRVISNGSEIVKVTKKPKKLDFGNSVSTNLNSKGKSLEIFADESEGNDDGLKMKKTKKTRVSVTENGKDDDKKEKMEIEVDSDSAFEVNVRSKSGTNNPTKYTSLKEKFFDSETKVTLTSEGESSKKKYNKRGKFECATCNKIFQSYQALGGHRASHKRTKGCNSSRIDQSSENENIAELELEVEVDVKINVNAEGRSIESERVLLEEEVPEIRNFLDLNLPATAASIDEERNGHSEIYKSWWLVGGSSSLKQETMAVGLLSN 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01747 527 Pfam C2H2-type zinc finger 10 32 - -
Trre5g01747 527 Pfam C2H2-type zinc finger 399 423 - -
Trre5g01747 527 Pfam C2H2-type zinc finger 106 128 - -
Trre5g01747 527 MobiDBLite consensus disorder prediction 130 157 - -
Trre5g01747 527 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 507 - -
Trre5g01747 527 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Trre5g01747 527 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Trre5g01747 527 SMART c2h2final6 399 421 IPR013087 -
Trre5g01747 527 SMART c2h2final6 104 126 IPR013087 -
Trre5g01747 527 SMART c2h2final6 10 32 IPR013087 -
Trre5g01747 527 SUPERFAMILY beta-beta-alpha zinc fingers 9 34 IPR036236 -
Trre5g01747 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 399 426 IPR013087 -
Trre5g01747 527 SUPERFAMILY beta-beta-alpha zinc fingers 105 421 IPR036236 -
Trre5g01747 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Trre5g01747 527 ProSitePatterns Zinc finger C2H2 type domain signature. 401 421 IPR013087 -
Trre5g01747 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Trre5g01747 527 Gene3D Classic Zinc Finger 1 130 - -
Trre5g01747 527 MobiDBLite consensus disorder prediction 130 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01747 Trre-Chr5 12813043 12814626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01747 1 233 C2H2 Transcription Factor Family AT1G26610 37.344 6.46e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g01747 zf-C2H2_6 1.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01747 - - tpra:123917472 794.267