Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01745 ATGATTAAAATAATCACTAGTGGGTTGGGTTATGGTGTATCTCCAGTTCTCTTTGCTCAAAACTCCATAGAACATGGAGTTAGTAATATGATACCCCCAGGGGCGATTATAAGCTTTCAACAGTTAGGTTTTTCGTTGGCTCAAACGATGACTCGCGTCTATATTGGAAATCTTGATTCACGAATTTCTGAAAGGGATCTTGAAGATGATTTTCATGTTTTTGGAGTTATACGAAGTGTTTGGGTTGCAAGGAGGCCACCTGGTTATGCTTTCATTGATTTTGATGACCGGAGAGATGCGCTCGATGCTATTCGTGAATTAGATGATGACGAGGAATCAGCACAATGCTTACTTTCTGGTCTACTAATTAGAAGTTTGAGTATCAGTACCTCAAACTGA 399 0.396 MIKIITSGLGYGVSPVLFAQNSIEHGVSNMIPPGAIISFQQLGFSLAQTMTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDDDEESAQCLLSGLLIRSLSISTSN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01745 132 SMART rrm1_1 52 119 IPR000504 GO:0003723
Trre5g01745 132 Gene3D - 45 117 IPR012677 -
Trre5g01745 132 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 51 108 - -
Trre5g01745 132 SUPERFAMILY RNA-binding domain, RBD 49 109 IPR035979 GO:0003676
Trre5g01745 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 132 IPR000504 GO:0003723
Trre5g01745 132 CDD RRM_SRSF3_like 52 108 - -
Trre5g01745 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01745 Trre-Chr5 12804431 12806817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01745 48 120 Eukaryotic Initiation Factors Gene Family AT2G36660 35.065 1.15e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01745 K12896 - mtr:112419871 123.635