Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01744 ATGTACCCTCAACAACAACAGTACCAAGTTTCACCCTTCAATTTTCAGCAACAGCAACAACCCTATTATTCATCATCACTTCATCCTCCTGGTACTGACCCAGTTGCAAATTCAACACCTTATTCTGCTCCTATTTCTGTTTATGCGTCACAAACAACAGATTATCCGAATTGGATTGTTCCACAATCTGAACATATCGCATATGATCCTGCTGTTGGTTCATCGTACGAGGCTTCAGCAGCGTCTGCAAGTTTGGTTCCTGCATGTTATGCTACATGGCCATATCCAAATTATGGCAATGATACTACAACAACGTTGCCTAACCAAACCAAAGTCTCCAAAGCTTTGAGATGTGAAGTGTGTAAAATTGATCTCAATAGCAAAGATTCTTATGAAAAGCATATAGCTGGAAAGAAACACAAGAAAAATTTACAGGTACAGACTAATCCTACTATTGCATCTCATGTGAATGTACAATGCGACACAAGTAGTATCCAAGGACAATCATTAATTGGTCCCGAAGCCGAGCAATTAGAGCCTAAGAAACAGGTTGTACCTAGTGGTGGTGCACCTGCTGATTCTGCAAAGGTTTGCTCAACTTGCAATGTCCTGTGCACTAGTCAAGATACATATAACAAACATATTGCTGGGAAAAAACATGCTAAACAGGTTAACTTGATGTCTAATAATGGCATTGGTTCATCTATTGCTGAATTCAAACGTAGCAGTGTTGGCCCATTGCAAAAAGCTGCTAGGAAAATCAAAGTTGCTCAATCTGCATGGTGTGAAATTTGCAAGATTACTTGTAACAGCAGGGATATTTACATTACACACTTAGCCGGTAAGAAACACTTGAAGAACTTGGAGAAACTGTCAAATCCCAAAACCGATGCCGGTACCAGTGCCACTACCACCGCCGCCACTGCAGCAAATACAAATACTTTAATCGGGCCACAGGAAAAGCCAGATACTGATAAACCAAAGAAAGCACCAGAAGTTGATATCGAAACGAAGAAACGTAAAATTGTGGAAGGAGGAGCTGCAGTTAATGAAATCAAATTGTGCACTTTATGCAATGTAGTGTGTAATAGCCAGAAGGTGTTCGATACTCACCTTGTTGGCCACAAACATCTTGCTATGGTGAAGAAGGCAGGGTCAAGCACTGGTTGA 1170 0.4085 MYPQQQQYQVSPFNFQQQQQPYYSSSLHPPGTDPVANSTPYSAPISVYASQTTDYPNWIVPQSEHIAYDPAVGSSYEASAASASLVPACYATWPYPNYGNDTTTTLPNQTKVSKALRCEVCKIDLNSKDSYEKHIAGKKHKKNLQVQTNPTIASHVNVQCDTSSIQGQSLIGPEAEQLEPKKQVVPSGGAPADSAKVCSTCNVLCTSQDTYNKHIAGKKHAKQVNLMSNNGIGSSIAEFKRSSVGPLQKAARKIKVAQSAWCEICKITCNSRDIYITHLAGKKHLKNLEKLSNPKTDAGTSATTTAATAANTNTLIGPQEKPDTDKPKKAPEVDIETKKRKIVEGGAAVNEIKLCTLCNVVCNSQKVFDTHLVGHKHLAMVKKAGSSTG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01744 389 Pfam Zinc-finger of C2H2 type 261 284 - -
Trre5g01744 389 Pfam Zinc-finger of C2H2 type 355 377 - -
Trre5g01744 389 Pfam Zinc-finger of C2H2 type 117 140 - -
Trre5g01744 389 Pfam Zinc-finger of C2H2 type 197 220 - -
Trre5g01744 389 SUPERFAMILY beta-beta-alpha zinc fingers 92 146 IPR036236 -
Trre5g01744 389 SUPERFAMILY beta-beta-alpha zinc fingers 349 383 IPR036236 -
Trre5g01744 389 SUPERFAMILY beta-beta-alpha zinc fingers 188 226 IPR036236 -
Trre5g01744 389 PANTHER ZINC FINGER RNA-BINDING PROTEIN 96 160 - -
Trre5g01744 389 Gene3D Classic Zinc Finger 100 147 - -
Trre5g01744 389 Gene3D Classic Zinc Finger 246 291 - -
Trre5g01744 389 Gene3D Classic Zinc Finger 175 227 - -
Trre5g01744 389 Gene3D Classic Zinc Finger 328 384 - -
Trre5g01744 389 SMART ZnF_U1_5 350 384 IPR003604 GO:0003676|GO:0008270
Trre5g01744 389 SMART ZnF_U1_5 193 227 IPR003604 GO:0003676|GO:0008270
Trre5g01744 389 SMART ZnF_U1_5 257 291 IPR003604 GO:0003676|GO:0008270
Trre5g01744 389 SMART ZnF_U1_5 113 147 IPR003604 GO:0003676|GO:0008270
Trre5g01744 389 SMART c2h2final6 353 375 IPR013087 -
Trre5g01744 389 SMART c2h2final6 196 220 IPR013087 -
Trre5g01744 389 SMART c2h2final6 116 140 IPR013087 -
Trre5g01744 389 SMART c2h2final6 260 284 IPR013087 -
Trre5g01744 389 MobiDBLite consensus disorder prediction 296 319 - -
Trre5g01744 389 SUPERFAMILY beta-beta-alpha zinc fingers 258 291 IPR036236 -
Trre5g01744 389 MobiDBLite consensus disorder prediction 296 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01744 Trre-Chr5 12799479 12803328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01744 187 384 C2H2 Transcription Factor Family AT5G61190 29.293 6.21e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g01744 zf-met 1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01744 - - cam:101495339 447.973