Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01736 ATGGTGGAACTCACAGAAGAACAAATAAAACAAATGGAAGCGAATCGCGTTGCTGCATTAGCAAAACGAAAAGCTTTCTTAGAATCCAATTCTCAACAGCCTCAACGAAACCCTTGGAATCTTTTCAAATGCCAGAAAATTGATCAACCTCAACCATTTCAACCTAAACCTGAACCTGAGCCTAATTTCAAATTCCTCGCGAGACTTGAAATTTGTTCGCATGATTCTTTCGCAATTTCTCCTCTTCCTGTTCCTAATTTCCATTTTCCAACCTTTGATACATGTTTCAGCATTCTCAATAACATTCTCTCACGTATGGATGTGGATCCATCACATTTTACTCAGACAAGTGCGGGCGGGAAAGCCTGTGTGTTCAAATTAGCGGAATACCGTAGTGTTTTGAAGTTGTTAAAGGCGGAGATTGAGGTGGAGGAGATTCCTTGGAACACTTTCAATGTGGTTGAGAAGCTTTCACATTTGGAGGGGAGGTGGACTCCGGTGAGACCGGAACATTTGAGTGATGGTAAGGTCGATGGTTTGATTAGAAAGTTGCCTAAGAGTTTACTTGATGTATTGTTGCCATTTCAAATGGATGGCTTAAGGTTTGCACTTAGAAGAGGTGGTCGATGTCTCATTTCTGATGAAATGGGACTTGGGAAGACACTTCAGGCTATTGCTATTGCAGGGTGTTTTATGGATGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGATATTCATGGGCTGAAGAAATTGAGCGGTGGCTTCCTTCCTGCTTGCCTGCCGATATCCATCTCGTTTTTGGCCATCAAGACAATCCTGTATACCTAACAAGATGCCCTAAAGTTGTGGTTATTTCTTATACCATGCTCCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTTTGATTGTTGATGAATCTCATCATGTACGCGCTTCAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAGAAATCAAGCGTATAATTCTGCTATCAGGGACACCTTCTTTATCAAGACCGTTTGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGACAACAAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGGAAAATTTTTGCGGATTACTCGAAGGGCATTCGCTTGGAGGAGTTGAATGTGTTGCTAAAGCAAACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTTTAACATTGTCATTGAAGAGATCAGATATAGTTGCAGCGAAAACTGCAGTTGGGGCTTTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGAGATGCCTTTGGAAAGTTTGGATGAACATGATGGAAAGCTTACTTATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTCGTGAATGGCTTTCCTTCCATTCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTATATATGTGACAAAGGAGTTGGTTTTGTGCGAATAGATGGACATACACTACCCAGAGATAGACAATCCGCAGTAACCTCATTTAGATCATCACCGGAGGTTAAAATTGCGATAATTGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCGGCAGCACAAGATGTTGTGTTTTTGGAGCTACCTCAGTGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAACATATACATTTTCTGTGCAAAGGAAACTTCGGACGAATCGCATTGGCAATATTTGAACAAAAGTTTGCACTGTGTTTCATCTACAACGGATGGCAAATATGATGCATTGGAAGAGATAAAGGTTGAAGGTATTTCTTCTGTAGGCCCATTCTTGAAAATGAAAAGATTTAAAGAACAATCTGCATCCATGGATGCATCCGTTAAAAGACAATTGGATACAGAACTCTCTGCAGTGAAATTAAATGAAACAGCAACTAATCTAGATGATGACCCTGGTCTTGTGAACAACATAAATCAGGGTGCTAATATTATGGTTGATAGTGTTTCCTTCCTAGAGTTAGGCAAGGCTTCAGTTTTGGGTGGAATTTGTGATGTAGATGTTTTTAATGCTGCGGATGGATGTTCTGAAGAGAGTTTTGAGGACAAAGATGAAGTAACAGAGGATAAAAAATCAACTTCAACAACAGATGCAAATGACGACGAGCCCAGTTATGCTGTTGAAACTGAAGCACATTGCTCTCATCAAGTTAATTCTTTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACCTCTATACTTGCATTTTGGGTAAAAATGCAAGACCACAGCCACTTTGTGAAAATTTCCGACCAGAGGACCTTGAGCTGCTGAGTCCTGCTGATGCTGATGAGAAGCAGGGTACAGAGTCTACATCTGTCAAGGATAATCCTGCTTATAGGAATGCTCTTCTGGATTTTGCAAATGAGTGGAAGAATTTAAGGTCAATTGAACGCAATAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAATTGTGCTACTTAAGTGAAAGTAATAACCACAACAACAAGGGATTAATAAATGGTGGAAGCAAAAGGCGCATGACTCCCTTAGTGGACATCAGCTATCCCTTACCACCAGATGCTGTTTGGAAAAAGGTTTTTCTACGAAGTGGCCGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCCGGAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAACAATGCATGGGTAATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATCAAGAGTATCGCATGAGAACCAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGCATATAAGACCTTTGTCCATTGAAAGACGGAGAGCGTACATTGAAAAAGTAGCACCAAATATTGCAAAGCGGACGAAGATGCTTGAGAAGCTTGTCAAAGAACCAATTGAAGGCAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAGGTGAATGCAAACTTGAGAATATGAGAACTCTTTGTGTGGCCTGCCATCACGATGTTACTGCTGTACAATGTGCTGAGCGACGCATTATAAGAGCAAATGCCCGGAAACAACTAAAAGAATTGATGAATTCCATGAAGGATAGCATGAAGGGTGTTGCTGGCACTAAGAATAAGGGCCAAATGCTTTACGCTGAGCAAGAAAGTATGCATGAGGATGATATTTTAGTCCCGGTTCCTGGAAGTGCCTATTCGCTAGCTAATAGCCAAGAAAGTGGAGATGCAACCTGTTAA 3492 0.4135 MVELTEEQIKQMEANRVAALAKRKAFLESNSQQPQRNPWNLFKCQKIDQPQPFQPKPEPEPNFKFLARLEICSHDSFAISPLPVPNFHFPTFDTCFSILNNILSRMDVDPSHFTQTSAGGKACVFKLAEYRSVLKLLKAEIEVEEIPWNTFNVVEKLSHLEGRWTPVRPEHLSDGKVDGLIRKLPKSLLDVLLPFQMDGLRFALRRGGRCLISDEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRYSWAEEIERWLPSCLPADIHLVFGHQDNPVYLTRCPKVVVISYTMLHRLRKSMLERKWALLIVDESHHVRASKKTSEPGEIKAVLDVASEIKRIILLSGTPSLSRPFDIFHQINMLWPGLLGTTKYEFAKTYCDLKYIKGVQGKIFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQILTLSLKRSDIVAAKTAVGALKIDASENASEEMPLESLDEHDGKLTYQELGIAKLSGFREWLSFHSLIAGSENASKMIIFAHHHKVLDGVQEYICDKGVGFVRIDGHTLPRDRQSAVTSFRSSPEVKIAIIGILAAGFGLDFSAAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNIYIFCAKETSDESHWQYLNKSLHCVSSTTDGKYDALEEIKVEGISSVGPFLKMKRFKEQSASMDASVKRQLDTELSAVKLNETATNLDDDPGLVNNINQGANIMVDSVSFLELGKASVLGGICDVDVFNAADGCSEESFEDKDEVTEDKKSTSTTDANDDEPSYAVETEAHCSHQVNSLRFEVSPYTGRIHLYTCILGKNARPQPLCENFRPEDLELLSPADADEKQGTESTSVKDNPAYRNALLDFANEWKNLRSIERNKLLGKPLQLPLAVELCYLSESNNHNNKGLINGGSKRRMTPLVDISYPLPPDAVWKKVFLRSGRGKKEKEYTQGWSPEDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLVCYQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVHIRPLSIERRRAYIEKVAPNIAKRTKMLEKLVKEPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCAERRIIRANARKQLKELMNSMKDSMKGVAGTKNKGQMLYAEQESMHEDDILVPVPGSAYSLANSQESGDATC 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01736 1163 Pfam SNF2-related domain 210 459 IPR000330 GO:0005524|GO:0140658
Trre5g01736 1163 Pfam HNH endonuclease 1049 1085 IPR002711 GO:0003676|GO:0004519|GO:0008270
Trre5g01736 1163 CDD SF2_C_SNF 484 613 - -
Trre5g01736 1163 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 365 IPR014001 -
Trre5g01736 1163 Gene3D - 412 692 IPR027417 -
Trre5g01736 1163 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 6 1104 - -
Trre5g01736 1163 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 494 648 IPR001650 -
Trre5g01736 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 416 IPR027417 -
Trre5g01736 1163 CDD HNHc 1047 1087 IPR003615 -
Trre5g01736 1163 MobiDBLite consensus disorder prediction 744 771 - -
Trre5g01736 1163 Gene3D - 174 411 IPR038718 -
Trre5g01736 1163 CDD DEXHc_HARP_SMARCAL1 192 416 - -
Trre5g01736 1163 Gene3D - 978 1114 - -
Trre5g01736 1163 FunFam SNF2 DNA repair protein, putative 166 415 - -
Trre5g01736 1163 Pfam Helicase conserved C-terminal domain 498 602 IPR001650 -
Trre5g01736 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 653 IPR027417 -
Trre5g01736 1163 Coils Coil 2 22 - -
Trre5g01736 1163 SMART helicmild6 519 602 IPR001650 -
Trre5g01736 1163 SMART ultradead3 188 384 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01736 Trre-Chr5 12735067 12751667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01736 497 620 RAD5 or RAD16-like Gene Family AT1G11100 35.714 2.84e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre5g01736 SNF2_N 1e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01736 K25861 - gmx:100788690 1710.66