Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g01736 | ATGGTGGAACTCACAGAAGAACAAATAAAACAAATGGAAGCGAATCGCGTTGCTGCATTAGCAAAACGAAAAGCTTTCTTAGAATCCAATTCTCAACAGCCTCAACGAAACCCTTGGAATCTTTTCAAATGCCAGAAAATTGATCAACCTCAACCATTTCAACCTAAACCTGAACCTGAGCCTAATTTCAAATTCCTCGCGAGACTTGAAATTTGTTCGCATGATTCTTTCGCAATTTCTCCTCTTCCTGTTCCTAATTTCCATTTTCCAACCTTTGATACATGTTTCAGCATTCTCAATAACATTCTCTCACGTATGGATGTGGATCCATCACATTTTACTCAGACAAGTGCGGGCGGGAAAGCCTGTGTGTTCAAATTAGCGGAATACCGTAGTGTTTTGAAGTTGTTAAAGGCGGAGATTGAGGTGGAGGAGATTCCTTGGAACACTTTCAATGTGGTTGAGAAGCTTTCACATTTGGAGGGGAGGTGGACTCCGGTGAGACCGGAACATTTGAGTGATGGTAAGGTCGATGGTTTGATTAGAAAGTTGCCTAAGAGTTTACTTGATGTATTGTTGCCATTTCAAATGGATGGCTTAAGGTTTGCACTTAGAAGAGGTGGTCGATGTCTCATTTCTGATGAAATGGGACTTGGGAAGACACTTCAGGCTATTGCTATTGCAGGGTGTTTTATGGATGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGATATTCATGGGCTGAAGAAATTGAGCGGTGGCTTCCTTCCTGCTTGCCTGCCGATATCCATCTCGTTTTTGGCCATCAAGACAATCCTGTATACCTAACAAGATGCCCTAAAGTTGTGGTTATTTCTTATACCATGCTCCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTTTGATTGTTGATGAATCTCATCATGTACGCGCTTCAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAGAAATCAAGCGTATAATTCTGCTATCAGGGACACCTTCTTTATCAAGACCGTTTGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGACAACAAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGGAAAATTTTTGCGGATTACTCGAAGGGCATTCGCTTGGAGGAGTTGAATGTGTTGCTAAAGCAAACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTTTAACATTGTCATTGAAGAGATCAGATATAGTTGCAGCGAAAACTGCAGTTGGGGCTTTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGAGATGCCTTTGGAAAGTTTGGATGAACATGATGGAAAGCTTACTTATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTCGTGAATGGCTTTCCTTCCATTCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTATATATGTGACAAAGGAGTTGGTTTTGTGCGAATAGATGGACATACACTACCCAGAGATAGACAATCCGCAGTAACCTCATTTAGATCATCACCGGAGGTTAAAATTGCGATAATTGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCGGCAGCACAAGATGTTGTGTTTTTGGAGCTACCTCAGTGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAACATATACATTTTCTGTGCAAAGGAAACTTCGGACGAATCGCATTGGCAATATTTGAACAAAAGTTTGCACTGTGTTTCATCTACAACGGATGGCAAATATGATGCATTGGAAGAGATAAAGGTTGAAGGTATTTCTTCTGTAGGCCCATTCTTGAAAATGAAAAGATTTAAAGAACAATCTGCATCCATGGATGCATCCGTTAAAAGACAATTGGATACAGAACTCTCTGCAGTGAAATTAAATGAAACAGCAACTAATCTAGATGATGACCCTGGTCTTGTGAACAACATAAATCAGGGTGCTAATATTATGGTTGATAGTGTTTCCTTCCTAGAGTTAGGCAAGGCTTCAGTTTTGGGTGGAATTTGTGATGTAGATGTTTTTAATGCTGCGGATGGATGTTCTGAAGAGAGTTTTGAGGACAAAGATGAAGTAACAGAGGATAAAAAATCAACTTCAACAACAGATGCAAATGACGACGAGCCCAGTTATGCTGTTGAAACTGAAGCACATTGCTCTCATCAAGTTAATTCTTTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACCTCTATACTTGCATTTTGGGTAAAAATGCAAGACCACAGCCACTTTGTGAAAATTTCCGACCAGAGGACCTTGAGCTGCTGAGTCCTGCTGATGCTGATGAGAAGCAGGGTACAGAGTCTACATCTGTCAAGGATAATCCTGCTTATAGGAATGCTCTTCTGGATTTTGCAAATGAGTGGAAGAATTTAAGGTCAATTGAACGCAATAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAATTGTGCTACTTAAGTGAAAGTAATAACCACAACAACAAGGGATTAATAAATGGTGGAAGCAAAAGGCGCATGACTCCCTTAGTGGACATCAGCTATCCCTTACCACCAGATGCTGTTTGGAAAAAGGTTTTTCTACGAAGTGGCCGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCCGGAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAACAATGCATGGGTAATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATCAAGAGTATCGCATGAGAACCAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGCATATAAGACCTTTGTCCATTGAAAGACGGAGAGCGTACATTGAAAAAGTAGCACCAAATATTGCAAAGCGGACGAAGATGCTTGAGAAGCTTGTCAAAGAACCAATTGAAGGCAATGCATGGCATGCTGATCACATTGTTCCAGTATATAAAGGCGGAGGTGAATGCAAACTTGAGAATATGAGAACTCTTTGTGTGGCCTGCCATCACGATGTTACTGCTGTACAATGTGCTGAGCGACGCATTATAAGAGCAAATGCCCGGAAACAACTAAAAGAATTGATGAATTCCATGAAGGATAGCATGAAGGGTGTTGCTGGCACTAAGAATAAGGGCCAAATGCTTTACGCTGAGCAAGAAAGTATGCATGAGGATGATATTTTAGTCCCGGTTCCTGGAAGTGCCTATTCGCTAGCTAATAGCCAAGAAAGTGGAGATGCAACCTGTTAA | 3492 | 0.4135 | MVELTEEQIKQMEANRVAALAKRKAFLESNSQQPQRNPWNLFKCQKIDQPQPFQPKPEPEPNFKFLARLEICSHDSFAISPLPVPNFHFPTFDTCFSILNNILSRMDVDPSHFTQTSAGGKACVFKLAEYRSVLKLLKAEIEVEEIPWNTFNVVEKLSHLEGRWTPVRPEHLSDGKVDGLIRKLPKSLLDVLLPFQMDGLRFALRRGGRCLISDEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRYSWAEEIERWLPSCLPADIHLVFGHQDNPVYLTRCPKVVVISYTMLHRLRKSMLERKWALLIVDESHHVRASKKTSEPGEIKAVLDVASEIKRIILLSGTPSLSRPFDIFHQINMLWPGLLGTTKYEFAKTYCDLKYIKGVQGKIFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQILTLSLKRSDIVAAKTAVGALKIDASENASEEMPLESLDEHDGKLTYQELGIAKLSGFREWLSFHSLIAGSENASKMIIFAHHHKVLDGVQEYICDKGVGFVRIDGHTLPRDRQSAVTSFRSSPEVKIAIIGILAAGFGLDFSAAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNIYIFCAKETSDESHWQYLNKSLHCVSSTTDGKYDALEEIKVEGISSVGPFLKMKRFKEQSASMDASVKRQLDTELSAVKLNETATNLDDDPGLVNNINQGANIMVDSVSFLELGKASVLGGICDVDVFNAADGCSEESFEDKDEVTEDKKSTSTTDANDDEPSYAVETEAHCSHQVNSLRFEVSPYTGRIHLYTCILGKNARPQPLCENFRPEDLELLSPADADEKQGTESTSVKDNPAYRNALLDFANEWKNLRSIERNKLLGKPLQLPLAVELCYLSESNNHNNKGLINGGSKRRMTPLVDISYPLPPDAVWKKVFLRSGRGKKEKEYTQGWSPEDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLVCYQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVHIRPLSIERRRAYIEKVAPNIAKRTKMLEKLVKEPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCAERRIIRANARKQLKELMNSMKDSMKGVAGTKNKGQMLYAEQESMHEDDILVPVPGSAYSLANSQESGDATC | 1163 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g01736 | 1163 | Pfam | SNF2-related domain | 210 | 459 | IPR000330 | GO:0005524|GO:0140658 | |
Trre5g01736 | 1163 | Pfam | HNH endonuclease | 1049 | 1085 | IPR002711 | GO:0003676|GO:0004519|GO:0008270 | |
Trre5g01736 | 1163 | CDD | SF2_C_SNF | 484 | 613 | - | - | |
Trre5g01736 | 1163 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 201 | 365 | IPR014001 | - | |
Trre5g01736 | 1163 | Gene3D | - | 412 | 692 | IPR027417 | - | |
Trre5g01736 | 1163 | PANTHER | DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER | 6 | 1104 | - | - | |
Trre5g01736 | 1163 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 494 | 648 | IPR001650 | - | |
Trre5g01736 | 1163 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 175 | 416 | IPR027417 | - | |
Trre5g01736 | 1163 | CDD | HNHc | 1047 | 1087 | IPR003615 | - | |
Trre5g01736 | 1163 | MobiDBLite | consensus disorder prediction | 744 | 771 | - | - | |
Trre5g01736 | 1163 | Gene3D | - | 174 | 411 | IPR038718 | - | |
Trre5g01736 | 1163 | CDD | DEXHc_HARP_SMARCAL1 | 192 | 416 | - | - | |
Trre5g01736 | 1163 | Gene3D | - | 978 | 1114 | - | - | |
Trre5g01736 | 1163 | FunFam | SNF2 DNA repair protein, putative | 166 | 415 | - | - | |
Trre5g01736 | 1163 | Pfam | Helicase conserved C-terminal domain | 498 | 602 | IPR001650 | - | |
Trre5g01736 | 1163 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 302 | 653 | IPR027417 | - | |
Trre5g01736 | 1163 | Coils | Coil | 2 | 22 | - | - | |
Trre5g01736 | 1163 | SMART | helicmild6 | 519 | 602 | IPR001650 | - | |
Trre5g01736 | 1163 | SMART | ultradead3 | 188 | 384 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g01736 | Trre-Chr5 | 12735067 | 12751667 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g01736 | 497 | 620 | RAD5 or RAD16-like Gene Family | AT1G11100 | 35.714 | 2.84e-14 | 75.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Trre5g01736 | SNF2_N | 1e-24 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g01736 | K25861 | - | gmx:100788690 | 1710.66 |