Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01728 ATGTCAGAACAAGAATATGATTCATGGAGCTTCATGTTGGTCTGTCTTTTGATCATTTTTTCAGGTAAACTTGTTGATGGAGATTCATTGGTAACAGACAAACAAGTATTATTGAATTTGAAATCCTATTTGGAGAATCAAACAGCTTCAAATAAAGGAGAATATATAAGATGGAACAAGAACAACAAATCAAATCCTTGTGATTGGTCAGGAATATCATGCAACCAAATCAAAGGTAAAAGAAAATGGAGGGTTGTGAGTGTAGATATCTCATCAAGTGAAATTGCAGGTAAGATGTTTGATAATTTCTCTCAGTTAACTCAACTCACACACCTTGATATTTCAAGGAACACTCTCTCTGGAGAGATAACTTCAGATATAAGAAACTGTAAAAATCTTGTGTATCTCAATTTATCTCATAATATTCTTGAGGGAGAAATGAATTTAACAGGTTTGAGTAAGTTGCAAACATTGGATTTGTCTATGAATAGAATTCAAGGTGAACTTAAGTTGAATTTTCCTGATAATTGTGATAGTTTGGTTACTTTGAATGTTTCAGATAATCACTTTTTCGGTAGGGTTGATAAGTGTTTTGATAAGTGTTCAAGGTTGAAGTATTTGGATTTGAGTACAAATAATATTAGTGGTGTTTTATCAAATGAAATTTCAAGGTTCAGACAATTTTCAATTTCTGAGAATTTTTTAAGTGGGATTATACCTTCACAAGCTTTTCCAGTAAATTGTAGTCTTGAAAAATTGGATCTTTCTGTCAATGGATTTTTCGGTAAACCGCCTAAGGAAGTTGCTAACTGCAAGAATTTAGAGATTCTAAATCTTTCTAGTAACAAATTTAGTGGTGAAATACCACATGAAATTGGTACAATTTCTGGTCTTAAATCACTGTTCTTGCAGAATAACACCTTTTCAAGAGATATTCCAAATACCCTTTTGAATTTGACCAATTTGTTTATCTTGGATATAAGTAGAAACAATTTTGGTGGCGAGGTACAACCGATTTTTGGTAAATTCAAGCAATTGAAGTTTCTTTTGTTACACACAAATTCTTATGTTAAAGGATTGAATTCATCAGGAATTTTCACTTTGACTAATCTTACAAGATTAGACTTAAGTTCCAACAACTTTTCAGGTCCATTACCTATTGAAATTTCTCAAATGTCTGGTCTCATATTCTTATCATTAAGCAACAATAACTTCAATGGTTCTATTCCTTCTGAATTAGGAAAGTTGAGTAAACTGCAAGCAATTGAACTTTCTTTCAATAGTTTCAATGGAAAAATTCCACCAAGCCTTGGAAACTTGAGTTCTCTTCTTTGGTTAATGCTTGCAAATAATTCATTAACCGGCGAAATCCCTCGTGAGTTAGGTAACTGTTCAAGTTTAATATGGTTGAACCTTGCAAACAACAAACTCACTGGAAAATTTCCTTATGAGTTGACCAAAATTGGAAGAAATGCTATGGAAACATTTGAATCGAATCATAGAAACATGGTTGGAGTTGTTGCTGGAAATAGTGAGTGTTTGTCGATGAGAAGATGGATACCTGCCGATTACCCTCCATTCAGTTTTGTGTATAGTATCTTAACAAGGAAGAATTGTAGATCCCTTTGGGATAGATTGCTTAAAGGTTATGGAATTTTTCCTATGTGTGCATCTGAACCATCAACTAGATCATCTCATAAATTTGGTTATGTTCAGTTAAGTGGTAATCGAATTAGTGGTGAAATTCCTTCAGAAATTGGAACCATGTTAAATTTCAGTATGTTGCATTTAGGAGACAACAAATTCAGCGGAAAATTTCCGAAAGAAATTGGTGATTTGCCACTTATAGTGTTGAACATGACCAGGAACAAATTTTCCGGTGAAATTCCGAGGGAAATTGGTAACATGAAGTGTATGCAAGATCTTGATTTGTCTTGGAACAATTTCTCAGGGACATTTCCAAAAAGTTTGGTCAATTTGGATGAACTTAGCAGGTTCAATATCTCATATAATCCTTTATTATCTGGTACAGTACCACCATTAGGTCACTTGCTTACTTTTGATAAGGATTCATATTTAGGTGATACCCTTTTAGATCTTCCAAAGTTTTTTGATAACACCCCAGATGGAAAAAACAAAACTTTTAACAAAAGAATGAGAAAAACCACAAAATGGTATCTTTGTGTTGCTCTAACACTAGCTAGTTTGGTTTCTGGAATTCTTTTTCTAACCGTTTATTTCTTGGTGAAAAGTTCATCTTTAGAACAAGGAAAGTTTCTCAAAGATAAAAATCAGGAATTTTTTTCTGATTCTATCAAGATATTCCACTTGAACAATATAGTTTTCACGTATGCCGACATTCTCGAAGCAACAAGCAACTTCAAAGAGGAAAGAATCATAGGAAAAGGCGGTTTTGGAACAGTCTACAAAGGAATTTTTCCTGATGGAAGAGAAGTGGCAGTGAAGAAGCTACAAAGAGAAGGAATTGAAGGCGAGAAAGAATTCAAAGCTGAAATGAAAGTCCTTAGTGGTCAAGAATTTGGATGGCCACATCCACACCTTGTCACACTTTATGGTTGGTGTTTATATGGTTCACAAAAGTTACTAGTTTATGAGTACATAGGAGGTGGAAGTTTGGAAGAATTAGTAACCGATACAAAAAAATTGACGTATAAAAGGCGCTTAGAAGTCGCGATTGATGTGGCTAAAGCGTTAGTTTATCTACACCATGAATGTTACCCTCCAATTGTGCATAGAGATGTGAAAGCAAGTAATGTGTTACTTGATAAAGAAGGTAAAGCAAAAGTAACTGATTTTGGACTTGCTAGAGTTGTTGATGTTGATGATAGTCATGTGAGTACAATTGTAGCTGGAACTGTTGGTTATGTTGCACCTGAATATGGACAAACATGGCATGCTACAACAAAAGGTGATGTGTATAGTTTTGGTGTGTTGATTATGGAGTTGGCAACTGGTAGAAGAGCTGTGGATGGAGGAGAAGAATGTTTGGTTGAATATGTTAGGCGTGTTATGGATAATGGTAGAAATGGATTTAGCCATTTTGGGCTAGTTGGTGGTGCAAAGGAGATGTTTGAGTTACTTCAAGTTGGAGTAAAGTGCACAAATGATTCACCACAAAATAGGCCTAACATGAAAGAGGTTCTAGCTATGTTGATTAAGATATTCAATTTTTATAGAAATTCAAATTATTGA 3213 0.342 MSEQEYDSWSFMLVCLLIIFSGKLVDGDSLVTDKQVLLNLKSYLENQTASNKGEYIRWNKNNKSNPCDWSGISCNQIKGKRKWRVVSVDISSSEIAGKMFDNFSQLTQLTHLDISRNTLSGEITSDIRNCKNLVYLNLSHNILEGEMNLTGLSKLQTLDLSMNRIQGELKLNFPDNCDSLVTLNVSDNHFFGRVDKCFDKCSRLKYLDLSTNNISGVLSNEISRFRQFSISENFLSGIIPSQAFPVNCSLEKLDLSVNGFFGKPPKEVANCKNLEILNLSSNKFSGEIPHEIGTISGLKSLFLQNNTFSRDIPNTLLNLTNLFILDISRNNFGGEVQPIFGKFKQLKFLLLHTNSYVKGLNSSGIFTLTNLTRLDLSSNNFSGPLPIEISQMSGLIFLSLSNNNFNGSIPSELGKLSKLQAIELSFNSFNGKIPPSLGNLSSLLWLMLANNSLTGEIPRELGNCSSLIWLNLANNKLTGKFPYELTKIGRNAMETFESNHRNMVGVVAGNSECLSMRRWIPADYPPFSFVYSILTRKNCRSLWDRLLKGYGIFPMCASEPSTRSSHKFGYVQLSGNRISGEIPSEIGTMLNFSMLHLGDNKFSGKFPKEIGDLPLIVLNMTRNKFSGEIPREIGNMKCMQDLDLSWNNFSGTFPKSLVNLDELSRFNISYNPLLSGTVPPLGHLLTFDKDSYLGDTLLDLPKFFDNTPDGKNKTFNKRMRKTTKWYLCVALTLASLVSGILFLTVYFLVKSSSLEQGKFLKDKNQEFFSDSIKIFHLNNIVFTYADILEATSNFKEERIIGKGGFGTVYKGIFPDGREVAVKKLQREGIEGEKEFKAEMKVLSGQEFGWPHPHLVTLYGWCLYGSQKLLVYEYIGGGSLEELVTDTKKLTYKRRLEVAIDVAKALVYLHHECYPPIVHRDVKASNVLLDKEGKAKVTDFGLARVVDVDDSHVSTIVAGTVGYVAPEYGQTWHATTKGDVYSFGVLIMELATGRRAVDGGEECLVEYVRRVMDNGRNGFSHFGLVGGAKEMFELLQVGVKCTNDSPQNRPNMKEVLAMLIKIFNFYRNSNY 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01728 1070 ProSiteProfiles Leucine-rich repeat profile. 132 153 IPR001611 GO:0005515
Trre5g01728 1070 FunFam Leucine-rich repeat receptor protein kinase MSP1 758 873 - -
Trre5g01728 1070 Gene3D Ribonuclease Inhibitor 29 175 IPR032675 -
Trre5g01728 1070 Gene3D Ribonuclease Inhibitor 335 508 IPR032675 -
Trre5g01728 1070 Gene3D Transferase(Phosphotransferase) domain 1 875 1068 - -
Trre5g01728 1070 Pfam Protein kinase domain 794 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01728 1070 FunFam Putative LRR receptor-like serine/threonine-protein kinase 343 505 - -
Trre5g01728 1070 CDD STKc_IRAK 800 1061 - -
Trre5g01728 1070 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Trre5g01728 1070 Gene3D Ribonuclease Inhibitor 176 246 IPR032675 -
Trre5g01728 1070 FunFam Leucine-rich repeat receptor-like protein kinase 874 1068 - -
Trre5g01728 1070 Pfam Leucine Rich repeat 368 383 IPR001611 GO:0005515
Trre5g01728 1070 Pfam Leucine Rich repeat 153 168 IPR001611 GO:0005515
Trre5g01728 1070 Pfam Leucine Rich repeat 200 216 IPR001611 GO:0005515
Trre5g01728 1070 Pfam Leucine Rich repeat 271 287 IPR001611 GO:0005515
Trre5g01728 1070 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Trre5g01728 1070 SUPERFAMILY L domain-like 64 359 - -
Trre5g01728 1070 Gene3D Ribonuclease Inhibitor 247 334 IPR032675 -
Trre5g01728 1070 ProSitePatterns Protein kinases ATP-binding region signature. 800 823 IPR017441 GO:0005524
Trre5g01728 1070 Gene3D Ribonuclease Inhibitor 550 713 IPR032675 -
Trre5g01728 1070 ProSiteProfiles Protein kinase domain profile. 794 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01728 1070 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 84 339 - -
Trre5g01728 1070 SMART serkin_6 794 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01728 1070 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 248 1060 - -
Trre5g01728 1070 SUPERFAMILY L domain-like 342 683 - -
Trre5g01728 1070 SUPERFAMILY Protein kinase-like (PK-like) 774 1059 IPR011009 -
Trre5g01728 1070 SMART LRR_typ_2 440 464 IPR003591 -
Trre5g01728 1070 SMART LRR_typ_2 368 392 IPR003591 -
Trre5g01728 1070 SMART LRR_typ_2 295 319 IPR003591 -
Trre5g01728 1070 SMART LRR_typ_2 152 176 IPR003591 -
Trre5g01728 1070 SMART LRR_typ_2 106 130 IPR003591 -
Trre5g01728 1070 Gene3D Phosphorylase Kinase; domain 1 755 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01728 Trre-Chr5 12661904 12667361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01728 67 1061 Receptor kinase-like Gene Family AT5G07280 32.847 2.24e-143 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Trre5g01728 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01728 - - gmx:100813425 1559.27