Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01726 ATGGGTTGTGTGAGTTCGAAGCAACAAACAGTGTCGGTGACGCCGGCGAATGAAAATTCAGGCGGTGTGTTAGAAAGGAAAGTGAAAAGTGAGTTAGAGAAAACGAGTCAGAATGGTGTTCGTTGTGAATCGTTGAGTTTCAGGTTAGGGAATTTGCATAAGTTTGTTCAAAGTGAACACGTGGCAGCTGGTTGGCCTGCTTGGCTTAGCGCCGTCGCTGGTGATGCTATTCACGGTTGGATTCCTCTTCGTCCTGATGCCTTTCTCAAACTCCAGAAGATTGGGCAGGGGACATATAGTACTGTATTTAAGGCGAAGGAGATTGAGACAGGAAAGATTGTGGCACTGAAGAAAGTGCGGTTCGACAATTTAGATCCGGAGAGTGTGAGGTTCATGGCAAGGGAGATAATGATATTGAGAAAGCTTGATCATCCCAATATCATGAAGCTTGAAGGGTTGATTACTTCCAGATCTTCTTGTACCATATACCTTGTATTTGAGTACATGGAGCATGACATTATAGGACTCTTGGGAAATCCTGATATCAAGTTCAGTCAACCACAGATTAAGTGTTATATGAATCAATTGTTATCTGCTGTTGAGTACTTTCACTCGCGAGGTGTAATGCACCGGGACATCAAAGGATCCAATCTTCTGGTGAATAATGAAGGAATATTGAAGGTGGCAGATTTTGGATTGGCGAACTTTGTTAGGTCTGGGAAAAAACATCCCCTCACTAGTCGTGTTGTCACATTATGGTATCGTCCACCGGAGCTTTTGCTTGGTTCGACCGATTATGATTCGTCTGTGGATCTTTGGAGTGTTGGTTGCGTCTTTGCAGAGTTACTTGTTAAGATTCCTATACTTCAGGGGAAAACTGAGGTAGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAGGTCTGAACTTCCTCGTGCAACTTTGATATATGATGGTTGCTTCAAAGAGTACTTTAAAGATTTGCCTCCAACCAGTGTACATTTGCTACAAACTCTTCTGTCTGTTGAACCTTACAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGTATTTCAAAACACAACCTTATGCATGTGATCCATCAAGTTTGCCGAAATACCCACCTAGCAAGGAAATTGACGCAAGACAAAGGGCGGCAGAGGAGGCAAGGAAAAAGAATGGAAGAGTTCGTCGAACTGAAACAATGAAACCATCAAGAAAGCCACAGGACATAGCAAATCAAACACAAAATTCTCAAAAGGTCAAGAGTAGATCTTTCCGAATCCATGAAGAAGAGAAGAGTAACTTTGTTTTGAAGGCACAAAAGCCATCCATTGATATACATGAGTATGCTTCCCATATGAAGAATGCATCTCAAGAAGATATTCCCTTTTCTGGACTATTACAAATTTCAAATTCAAGTGGCTTTGCTTGGGCAAAAAGCAGGAAAGACGACACTTCAATTCGATCACGTTGTCAATCTTTTTCTAAAGGACCTAGTTTCAATGCGTTAGATTCTTCTGTATTAAACAGGAGGAATAATTTGGAAACAATAAATCATGATAATAAGGAGTTTTGTGAGAGAAATACCAACTCTGGACACTTCGAAAATTCTAAGGCTTCAAAGCAGAATCAGTGGAGTAGGTTTGATCGTCTAGAGTCATTCGATGCTTCTGATGAGTACCACTCACAAGAATTGTCGGTGCTTTACCGGGGAGAAGATTCATTATCCAAAAGAAGTAATCTGAGTTACCAGGACCAAGCAGAAAAGATTGGCTTTTCGGGACCCCTATTGTCGAAAATGCACACGGTTGACGAGCTCTTAGAAAGGAATGAGCGTCACATCCGGCGAACGGTTCGAAGATCATGGTTTCGTAAAGGTAAGAAGCATGGGAAGAGAATGTAG 1932 0.4187 MGCVSSKQQTVSVTPANENSGGVLERKVKSELEKTSQNGVRCESLSFRLGNLHKFVQSEHVAAGWPAWLSAVAGDAIHGWIPLRPDAFLKLQKIGQGTYSTVFKAKEIETGKIVALKKVRFDNLDPESVRFMAREIMILRKLDHPNIMKLEGLITSRSSCTIYLVFEYMEHDIIGLLGNPDIKFSQPQIKCYMNQLLSAVEYFHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFVRSGKKHPLTSRVVTLWYRPPELLLGSTDYDSSVDLWSVGCVFAELLVKIPILQGKTEVEQLHKIFKLCGSPPDEYWKRSELPRATLIYDGCFKEYFKDLPPTSVHLLQTLLSVEPYKRGTATSALSSEYFKTQPYACDPSSLPKYPPSKEIDARQRAAEEARKKNGRVRRTETMKPSRKPQDIANQTQNSQKVKSRSFRIHEEEKSNFVLKAQKPSIDIHEYASHMKNASQEDIPFSGLLQISNSSGFAWAKSRKDDTSIRSRCQSFSKGPSFNALDSSVLNRRNNLETINHDNKEFCERNTNSGHFENSKASKQNQWSRFDRLESFDASDEYHSQELSVLYRGEDSLSKRSNLSYQDQAEKIGFSGPLLSKMHTVDELLERNERHIRRTVRRSWFRKGKKHGKRM 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01726 643 Gene3D Transferase(Phosphotransferase) domain 1 171 407 - -
Trre5g01726 643 MobiDBLite consensus disorder prediction 415 431 - -
Trre5g01726 643 FunFam probable serine/threonine-protein kinase At1g54610 75 170 - -
Trre5g01726 643 ProSiteProfiles Protein kinase domain profile. 88 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01726 643 PANTHER CELL DIVISION PROTEIN KINASE 87 371 - -
Trre5g01726 643 MobiDBLite consensus disorder prediction 377 434 - -
Trre5g01726 643 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Trre5g01726 643 SUPERFAMILY Protein kinase-like (PK-like) 82 374 IPR011009 -
Trre5g01726 643 CDD STKc_CDK9_like 88 367 - -
Trre5g01726 643 MobiDBLite consensus disorder prediction 1 19 - -
Trre5g01726 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Trre5g01726 643 Gene3D Phosphorylase Kinase; domain 1 77 170 - -
Trre5g01726 643 MobiDBLite consensus disorder prediction 386 414 - -
Trre5g01726 643 FunFam probable serine/threonine-protein kinase At1g54610 171 407 - -
Trre5g01726 643 SMART serkin_6 88 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01726 643 Pfam Protein kinase domain 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01726 643 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01726 Trre-Chr5 12634727 12641993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01726 86 401 Core Cell Cycle Gene Families AT5G10270 48.246 1.27e-98 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre5g01726 Pkinase 1.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01726 - - gmx:100803328 932.554