Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01725 ATGGCGCTGTTCCGAAGATTCTTTTACCGGAAACCGCCGGATCGTCTTCTTGAGATCTCCGAGAGAGTCTACGTTTTTGATTGCTGCTTCTCTACGGACGTCTTGGAAGAGGATGAGTACAAAGTCTATATGGGGGGCATTGTAACTCAGCTACAAGATTACTATCCAGATGCTTCTTTCATGGTATTCAATTTCAGAGAAGGGGATAGGCGCAGCCAAATTGCAGACCTTTTATCTCTGTGTGACATGACAGTTATGGAGTACCCTCGGGAATACGAGGGCTGTCCACTTCTGCCTTTAGAGATGATTCATCACTTCCTACGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGAGGGGGATGGCCCGTGCTGGCGTTTATGCTTGCCGGTCTTTTATTGTACCGAAAACAATACAGTGGGGAGCTGAAGACTCTTGAAATGGTCTACAAGCAAGCACCTAGAGAACTTCTCCAGCTTTTATTACCTTTGAACCCACAACCTTCTCAGTTAAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCTCCATCAGAAACGCCCTTATATTTGGATTGTTTGATTCTAAGAGTTCTTCCATTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCCGGACCCTTCAAATCCTGCCAATAGAAGTTCTAAGCTTCTTTTCTCAACTTCAAAAAATCAAACACACGTTCGCCACTACCTGCAGGCAGAATGTATGCTCGTGAAAATTGATATTCGTTGTCGTGTTCAAGGGGATGTCGTTCTTGAGTGCATACATTTAAGCGAAGATTTCATTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACAGCGTTTGTACGGTCAAATATTTTGGTGCTGAGCCGCGATGAAATGGATATGTTGTGGGATACAAAGGATCAGTTCTCCAAGGATTTTAAATCTGAGGTGCTTTTTTTGGATGCTGATGCTGTTATACCTGATCTAACCACAGTCAATGTGAGTGGAGATGAAAATGAAACAGAAAGCGGTTCACCTGAGGAATTCTATGAAGTGGAAGAGATCTTCAGCAATGTAATTGATGCACAGGATTCTCCAAGGGTTCGTGACAGTGCGGTAGAAGATGGAAGCCATAAAGATATCTGGAATGAGTATTCAGATCCTCATACTTTTCAGGATTCTACACCAGATGATGGGATTCACCAGCAGGTTGGAGCGACGGATTCTGGTATTAATGAAGTGAAAGACATTACTGTTGATGATGTGAATTACAAGCTCGATGAGCGTGTAGATTCAGATACTCATGTAGTGAAAGATATTGCTGTGGATGATGGGTACAATAAGCCAAGTTCCATTGCAGTCACTTTTGATATGATGGAAACTCCGGAGAGACAGGAAGTCACTTTAGATGCACATGAGGAGTTGGCAGTTATGCAAAACAATTATGATGAAGATAACAACACACCACTAAAAGAATTAGAGCCTGAGGAAGGGAAGCAGATGCATGATCTTCCCAGATCAATGTCTGTTGAAAATAACAAAGATTCCTATCAAGATTCATTGCATGTTTCATATCCACTGACAAGGCATAGTAGTTTACCAAATGCTCTGTTAAATGCCGCCGGTGCAAAGGAGAAAATGACTAATGCTGAAGAAAGACTTATTTCTAGTCCTCATGTCAACGAATCGGCTGATTCTATGGACATGACAAATGATCTGAAAAGTTGTAATAGGAACAATTCCAAATCTTTAGAAAGCATAGGGGAAACAGACTCAAACGCCCAGCTATCATCAATAATGCCAATTACAGAGTCATCTCATCAGACAACTACTCAAACACCACAGTTGAGCACTGATCAAGTGCTACAGCCTCATCCTCCCCCACCACCCCCACCTCCACGCAAATTACCATCTTCTTCCTTGGTTGGCGAAGTGTCTACAATACCGCAACCGCCGCCACAACCGCCACCGCCACCACCTACTTTGACACTATTTGGTAAGAAAAATAAAGAGATGGACTTACAAGCTGCAACTCCTCCTCCTCCACCGCCACCTCCCCCTCCATTTTCTGGGCAAAATAGAGGGAGCTCATTACCACTTTCTAGTCATTGGCAGTCAGTTTATTCATCCATTGGTGAAGTTGGAGAAAATAGTGGTGTTCCTCCACCACCACCACCACCCCCATCTCCTCCCACAAAATATGGAGTTACGTCCGTTCCTCCTCCACCACCTCCCCCGCCTCCTTTGTTTTATATGGATAGAGCTCCACTCCTTCCTCCCTCAACACCAACATCACTTCACACTCCATCCCCGCCACCTTTATGTAAATCTTCACCTCCACTACCATCACCACCACCTCCTCCACCTCCGCCTCCGCCTGTTGTATATAGAGCTTTACCATCAGCACCTTCATCTTCTTTTACTAGAGCCCCACCACCACCTCCTCCACCGCCACCTTCTTTATGTATAGCTCCATCATCTCCACCTTCTATTGGTATAGATACAGCGCCTCCAACTCTTCCTCCATCAAGTGAACAACCTCCACCGCCACCACCGCCACCATATCGTCCTGCAATGTCCAAGGCCCCACCACCACCACCACCACCTCCTTCTTCAATGCCTAAAGCCCCACCACCCCCACCTCCACCATTCTATGGAGCTCTACCATCACCGCCACCACCTCCTTCAATGTCTAAAGTCCCACCACCCCCACCACCACCACCATCACCATCACATCTTGCTTCAAATGGAGCACCTCCATCACCACCCCCACCTCCTTCAATGTCTCAGGCTCCACCACCACCACCACCTCCTTCAATGTCTCAGGCTCCACCACCACCACCCCTAACTCCTTCAATGTCTCAGGCTCCACCACCTCCACCTCCACCTCCTTCGATGTCTAAGGCCCCACCACCTCCACCATCACCACCACCACCAAATCTTCCTGCATCAAGCGAAGCACCTCCTTCAATGTCCAAGGCTCCACCACCCCCACCTCCACCACCTCCTTCAATGTCTCCACCACCCCCACCTCCACCATTTTATGGATCTCCATCATCACTACCAACTAATCTTCCTGAATCAAGTGAAGCACCTCAACCACCTCCTTCAACGTCTAAGGCCCCACCACCCCCACCACCACCATCATATCTTCTTGCATCAAATGGAGCACCTCCACCACCACCACCTCCTTCAATGTCTAATCCCCCACCACCCCCACCTCCACCATTCTATGCAGCTCCACCACCACCACCACCACCACCACAATCATATCTTCTTGCATCAAATGAAGCACCGCCACCACCTCCTTCAATGTCTAACCCCCCACCACCCCCACCCCCACCATTCTATGGAGCTCCACCACCACCCTCACCTCCTTCAATGTATAAGGCCCCAACACCCCCACCTCCACCATTCTATGGAGCTCCACCACCACCACCACCACATCCTTCAATGTCTAATGCCCCACCACCCCCACCTCCACCATTCTATGGAGCTCCACCACCACCATCTCCAATGCATGGAGCACGAGCGCCACCTCCTCCACCTCCTCCGGGTGGTGGAGGCCCACCTCCTCCTCCACCTCCAGGTTTTCAAGGCCCACCTCCTCCGCCACCTCCAGGTAGTCGAGGCCCAGCTCCACCACCGCCTCCTGGAGTTGGAGTGCCTGGTGCTCCTGCACCTCCTAGACTTCCAGGTGGTGCACCTCCACCACCTGGAGGTCCGGGAGGAGGGAGAGGGCGTGGACTTGCACGTCCTACAGGTGCTGGTGCTCCTCGAAAATCCTCCTTAAAGCCTCTTCATTGGAGTAAGGTAACAAGGGCATTGAAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAAACTCAAAGTGGACAGGAGTTTGACGTTTCAGAGTTAGAGAAGCTTTTTGCTCTAAATGCTCCAAAACCAACTGGTAGACCTGGAGGGAACAAACCAGTAGCACCCAAAAATGACAAAATCACCCTGGTTGACTTAAAGAGAGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTTGCTTTGGATGACTCGGTATTAGATGTTGATCAGGTGGAAAATCTTGTTAAATTTTGTCCTACCAAAGACGAAATGGATCTTTTGAAGGGATATACTGGTGACAAGGAAAATTTGGGAAAGTGTGAACAGTTCCTTTTTGAGCTGATGAAAGTGCCACGAGTGGAGTCGAAATTACGAGTATTCTGTTTCAAGATTCAATTTCAGTCTCAGATTACAGAGTTTAATAAGAGTTTAAACTTAGTGAACTCTGCATGTGACGAGGTCCGAAATTCACTCAAGCTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTGGATAGCCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAAGAATCCTACACTCCTTGATTTTCACCATGACCTAGGTAGCGTAGAGACTGCCTCTAAGATTCAACTGAAAGCATTAGCAGAAGAAATGCAGGCAATTACCAAGGGACTAGAAAAAGTAAACCAGGAGCTTGCTGCATCTGAAAATGATGGCCCAGTGTCTGAAGTTTTCCGTAAGACATTGAAAGGTTTCATTAATGAAGCCAAGTCTCAGGTGGATTCTGTAACACGCCTATATTCTGATGTGGGTAGAAATGCAGATGCACTTGCACAATATTTCGGTGAGGATCCTGCCCGTTGTCCATTTGAGCAAGTTACTGCAACTCTCTTAAATTTTATGAAGTTGTTTCTCAAAGCACATGAAGAGAATATCAAACAAGCAGAATTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGAAAGCTGAGAAAGAGGCTGGAACGGAGAAGCGTAAAGGCAGTAACTTGACAAGGAAGAGTGGAAAAGATAAAGAAGAAGGAAGCTGA 5091 0.4665 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYMGGIVTQLQDYYPDASFMVFNFREGDRRSQIADLLSLCDMTVMEYPREYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGELKTLEMVYKQAPRELLQLLLPLNPQPSQLRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDDGKGCRPVVRVYGPDPSNPANRSSKLLFSTSKNQTHVRHYLQAECMLVKIDIRCRVQGDVVLECIHLSEDFIREEMMFRVMFHTAFVRSNILVLSRDEMDMLWDTKDQFSKDFKSEVLFLDADAVIPDLTTVNVSGDENETESGSPEEFYEVEEIFSNVIDAQDSPRVRDSAVEDGSHKDIWNEYSDPHTFQDSTPDDGIHQQVGATDSGINEVKDITVDDVNYKLDERVDSDTHVVKDIAVDDGYNKPSSIAVTFDMMETPERQEVTLDAHEELAVMQNNYDEDNNTPLKELEPEEGKQMHDLPRSMSVENNKDSYQDSLHVSYPLTRHSSLPNALLNAAGAKEKMTNAEERLISSPHVNESADSMDMTNDLKSCNRNNSKSLESIGETDSNAQLSSIMPITESSHQTTTQTPQLSTDQVLQPHPPPPPPPPRKLPSSSLVGEVSTIPQPPPQPPPPPPTLTLFGKKNKEMDLQAATPPPPPPPPPPFSGQNRGSSLPLSSHWQSVYSSIGEVGENSGVPPPPPPPPSPPTKYGVTSVPPPPPPPPPLFYMDRAPLLPPSTPTSLHTPSPPPLCKSSPPLPSPPPPPPPPPPVVYRALPSAPSSSFTRAPPPPPPPPPSLCIAPSSPPSIGIDTAPPTLPPSSEQPPPPPPPPYRPAMSKAPPPPPPPPSSMPKAPPPPPPPFYGALPSPPPPPSMSKVPPPPPPPPSPSHLASNGAPPSPPPPPSMSQAPPPPPPPSMSQAPPPPPLTPSMSQAPPPPPPPPSMSKAPPPPPSPPPPNLPASSEAPPSMSKAPPPPPPPPPSMSPPPPPPPFYGSPSSLPTNLPESSEAPQPPPSTSKAPPPPPPPSYLLASNGAPPPPPPPSMSNPPPPPPPPFYAAPPPPPPPPQSYLLASNEAPPPPPSMSNPPPPPPPPFYGAPPPPSPPSMYKAPTPPPPPFYGAPPPPPPHPSMSNAPPPPPPPFYGAPPPPSPMHGARAPPPPPPPGGGGPPPPPPPGFQGPPPPPPPGSRGPAPPPPPGVGVPGAPAPPRLPGGAPPPPGGPGGGRGRGLARPTGAGAPRKSSLKPLHWSKVTRALKGSLWEELQRHGETQSGQEFDVSELEKLFALNAPKPTGRPGGNKPVAPKNDKITLVDLKRANNTEIMLTKVKMPLPDMMAAVLALDDSVLDVDQVENLVKFCPTKDEMDLLKGYTGDKENLGKCEQFLFELMKVPRVESKLRVFCFKIQFQSQITEFNKSLNLVNSACDEVRNSLKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLAEKNPTLLDFHHDLGSVETASKIQLKALAEEMQAITKGLEKVNQELAASENDGPVSEVFRKTLKGFINEAKSQVDSVTRLYSDVGRNADALAQYFGEDPARCPFEQVTATLLNFMKLFLKAHEENIKQAELEKKKAEKEAEMEKKAEKEAGTEKRKGSNLTRKSGKDKEEGS 1696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01725 1696 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1271 1668 IPR015425 -
Trre5g01725 1696 PANTHER FORMIN-J 1184 1673 - -
Trre5g01725 1696 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1344 1671 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 573 1287 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 573 637 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 1656 1696 - -
Trre5g01725 1696 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Trre5g01725 1696 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 665 680 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 779 815 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 710 730 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 1045 1260 - -
Trre5g01725 1696 SMART it6_source 668 1696 IPR015425 -
Trre5g01725 1696 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Trre5g01725 1696 Gene3D Formin, FH2 domain 1290 1682 IPR042201 -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 693 709 - -
Trre5g01725 1696 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Trre5g01725 1696 Pfam Formin Homology 2 Domain 1276 1642 IPR015425 -
Trre5g01725 1696 Gene3D - 205 336 - -
Trre5g01725 1696 SMART PTEN_C2_2 198 1380 IPR014020 -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 735 771 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 823 1036 - -
Trre5g01725 1696 MobiDBLite consensus disorder prediction 638 654 - -
Trre5g01725 1696 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Trre5g01725 1696 Coils Coil 1636 1675 - -
Trre5g01725 1696 Coils Coil 1549 1576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01725 Trre-Chr5 12616753 12631115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01725 1 554 FH2 protein (formin) Gene Family AT5G07740 59.865 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01725 - - tpra:123913936 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01725 5 12616753 12631115 Trre5g01725 5 12616753 12631115 ECH