Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01722 ATGAATTCAAACATCAATGATGAAATCCCAGTTCACACTATGGTAAGAGCATGCTGTTGTTTTTGTGATTCAATGTTGAAATTCAATCTATTCACTCATAGAATAACCCTTCATTCTACTCTTCTTTGCCGCAATGCTTTTTCTATATTCTTCAATTCTCGTTCTTTTACTATTTCCAACACAAATCATCATCAAGGTGACTCTTTTACGTTATCAAGCTTCATTGATTCATGTGGGTTGTCCCCTGAAAAAGCCCTTAAACTCTCTAAAAGGTTGAAAATCAGAAACTCTGATGATGGCCCAAATGCTGTTATTCAACTTTTCAGAAACTATGGCTTCTCTGATTCCCAATTATCAGCCCTTGTTAAGAGACACCCTTTTGTGCTTTTAGCAAAACCTGAAAAGACCCTTTTGCCCAAACTCAACTTTTTGCAATCCATTGGGGTTTCAACAACTGATCTCCCCAAAATCCTAATTGGGAACACTGATTTTTTAAAACTAAGTTTGGAGAAAAACCTTATACCTCGTTATCACATTATCAGGAGCCTTGTTCGCAATGATAAAGAGGTAGTTTCAGTTTTTAAGTGTTGGAGATATTACTTTTTTTACAGTGATTCCATGGTTCCAAACATCGAGGTTTTGAGGAAGCTTGGTGTGCCTCAAAGTTGTGTTTCCCTTTTGGTATCCAATTATCCCAATGTAGCATTCTGCAAGCATTCTAGATTTGTTGTGGCTGTTAATATAGTAAAGGAAATGGGGTTCGATCCTTTGAAGTCCAATTTTGTTTTGGCACTTCGAGTAATTGCGGGGCTGGTCAAAGAGACATGGGAATCAAAATTGAAGATTTTTGAGAGGTGGGGATGGTCGAAAGATATCTGTCTTTTGGCGTTCCAAAAGCATCCTCAGTATGTGACGGTCTCAGAAAAAAAGATTATAAAATCAATGACCTTCTTGGTGAAGGATATGGGTATTACCCCTGAAGACATTGCTAGAAGCCCTACTATTCTGAACCGTAACTTGGAGAAGACGTTAATACCTAGATGTGCGGTTGTTAAGATTTTGAAGTCAAGGGGTTTGATAAAAAGTGATTTGCGCATAGGTACCTTTATTAAAATAAGCGAGAAAACATTTTTGGAGAGATATGTTACCCCATTTCAGAAAGATTTGCCACTGGTATTGGCTGTATATGAAGGTCAGAAGTTAGATTGA 1209 0.3747 MNSNINDEIPVHTMVRACCCFCDSMLKFNLFTHRITLHSTLLCRNAFSIFFNSRSFTISNTNHHQGDSFTLSSFIDSCGLSPEKALKLSKRLKIRNSDDGPNAVIQLFRNYGFSDSQLSALVKRHPFVLLAKPEKTLLPKLNFLQSIGVSTTDLPKILIGNTDFLKLSLEKNLIPRYHIIRSLVRNDKEVVSVFKCWRYYFFYSDSMVPNIEVLRKLGVPQSCVSLLVSNYPNVAFCKHSRFVVAVNIVKEMGFDPLKSNFVLALRVIAGLVKETWESKLKIFERWGWSKDICLLAFQKHPQYVTVSEKKIIKSMTFLVKDMGITPEDIARSPTILNRNLEKTLIPRCAVVKILKSRGLIKSDLRIGTFIKISEKTFLERYVTPFQKDLPLVLAVYEGQKLD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01722 402 PANTHER CGI-12 PROTEIN-RELATED 66 384 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 FunFam Mitochondrial transcription termination factor-like 169 389 - -
Trre5g01722 402 Gene3D Transcription termination factor 3, mitochondrial 163 389 IPR038538 -
Trre5g01722 402 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 SMART mt_12 225 255 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 SMART mt_12 326 360 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 SMART mt_12 191 220 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 Pfam mTERF 105 311 IPR003690 GO:0003690|GO:0006355
Trre5g01722 402 Pfam mTERF 273 378 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01722 Trre-Chr5 12589082 12590343 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre5g01722 mTERF 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01722 K15032 - gmx:106799612 430.254