Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01716 ATGGCAACTCAAACCCCTTCCGATTCTCTCGATCATTCCCTTCTCCACGTCCACGACTACGTTTTGGAAAATGGACCAGAAGGATTGGCATGGGACACATTTCATTATGTTTACGAGCTTGTACAAAAGGGCAATTTGGCCTTTCAAGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAGCATCAAATCTAGTGATCCAATCATCCTCGGCAATAGAAGTGCAGCTTATATTAGGATTAGCCAATATTTAATGCATAGATCATCATCATCCTCAGAACATAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCCGAACTGGGATTGAAAGATGCTGCAAAGCTTGTGGAACTCCAAAGTAATTCAGTAAAACCATACCTTTTGAAGGCCAGTGCTCTTCTACTATTAGAGAAATATGATGTGGCTCAGGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTCAGTAATTCCCTTCGGGAATGTCTTCAAAAAGTGGAAAGAGTATCATCTAGTTCAACAGGGAGAAGTCCACATGGACAACCAGAGCGCAATGATGACTTTGATTGCACTCTGTGCCTGAAGTTACTTTATGAACCTGTCACAACCCCCTGTGGACATTCTTTTTGCCGCTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGCTCATTAGCCCCAGAACATGTTCCATTAGTGTGACGTTGAAGAGCATCATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAACAGGAGCATGACAGTTTAGTTAACATTGGTGTAGATATGCTCCCTCTTTTTGTCATGGATGTTGTCTTACCGTGTCAAAGGTTTCCACTAAATATATTTGAACCTCGTTATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCGTCGAATGGGAATGGTTATAATAGATTCTTCAACAGGTTCATTAGCAGAGTTTGGCTGTGAAGTTGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAGGTCGTAGGAGATTTCGCAACCTCCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGATATTATGCCACCAGAAGGGACAAAAGAAAAAGAGGAATTACAGGAATTGACATACAATGCGGCAGAAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGATTAGAGAAACTCGTCAATGTTGAAGGAATGATACCCTCATTAAGAGACCCTGAGCGCTTTAGTTTTTGGCTGGCTACCCTTTCCAATAGGAGGCCTTCAGAAAGATTGGATCTCCTACGGATTAGAGATACTACAGAGAGAATTAGACGAGGCCTGATATTTCTTCGAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1458 0.4177 MATQTPSDSLDHSLLHVHDYVLENGPEGLAWDTFHYVYELVQKGNLAFQENRMEEAINFYSRANSIKSSDPIILGNRSAAYIRISQYLMHRSSSSSEHRPLSGLDPTTLAELGLKDAAKLVELQSNSVKPYLLKASALLLLEKYDVAQDVILSGLQVDPFSNSLRECLQKVERVSSSSTGRSPHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLLISPRTCSISVTLKSIIQKNFPEEYAERKQEHDSLVNIGVDMLPLFVMDVVLPCQRFPLNIFEPRYRLMVRRIMEGNRRMGMVIIDSSTGSLAEFGCEVEITECEPLPDGRFYIEIEGRRRFRNLRSWDQDGYRVAEVEWIHDIMPPEGTKEKEELQELTYNAAESARSWIGRAKEAARQDQRRLEKLVNVEGMIPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01716 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Trre5g01716 485 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Trre5g01716 485 SUPERFAMILY PUA domain-like 279 475 IPR015947 -
Trre5g01716 485 SMART ring_2 195 232 IPR001841 -
Trre5g01716 485 SUPERFAMILY TPR-like 36 168 IPR011990 GO:0005515
Trre5g01716 485 Gene3D Tetratricopeptide repeat domain 36 174 IPR011990 GO:0005515
Trre5g01716 485 PANTHER RING FINGER PROTEIN 127 20 477 - -
Trre5g01716 485 ProSiteProfiles Lon N-terminal domain profile. 276 477 IPR003111 -
Trre5g01716 485 Gene3D - 277 379 IPR046336 -
Trre5g01716 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Trre5g01716 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 475 IPR003111 -
Trre5g01716 485 SUPERFAMILY RING/U-box 190 258 - -
Trre5g01716 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 274 IPR013083 -
Trre5g01716 485 SMART lon_5 278 477 IPR003111 -
Trre5g01716 485 Gene3D - 411 477 - -
Trre5g01716 485 CDD RING-HC_LONFs_rpt2 192 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01716 Trre-Chr5 12563371 12573212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01716 186 236 C3H Transcription Factor Family AT1G74990 35.185 5.71e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01716 - - lja:Lj0g3v0312049.1 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01716 5 12563371 12573212 Trre5g01716 5 12563371 12573212 ECH