Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01712 ATGGAGAGTGAGGGATTTGATTTGAATAGAGGAACAAGTGGTGGGAATAATGGTAAGATTGGTGATGATTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATACTGATTCAAATAGCTCTCAAGAGGTTTTTACACTTCTATTAAGATGCTGTTATCAGGTTATTTCAGTGAAATCAGCAAGACAAGTAATTGATGCACTGAATGCAGAGGGGGAACATATAGATCTCATACTAGCTGAAGTTGGTCTTCCAAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCAAGGGACAAAGAATTGCGCAGAATTCCTGTTATAATGATGTCCGCGCAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCGGACTATCTAGTAAAGCCTTTACGCACAAACGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTTCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACCTTGTTTTCTGATGACACTGATGATAGGTCCAAAAGAAACACTATTCCAGAGACAGAAATGTCAGTCCAACAAGAGCAAGTGTCTACTATTGCAAATGCTGCTGCTGTCGAGGAACCTCCAGATGACCATGCATCAGAATGTCAGCTGGATGTCCATGGAATAAATGATCAGAGAATAGCACACTTTTCATCTGGTCCAAAGAAGAGTGAACTAAGGATCGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTAAAGAGAAACCTTGAAGGGATTGTTCATGTTGATAACAATGCTGCCGAACGTTTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAGTAGTGACTTCGAAATACGCGAAAATGGAGACACATGTGAAAGTCAATCGCAAGAAGACTTGCCTAGTAGCAATAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCGCCTGCATCTACGGAAGCTTCACAGCAAAACCGTTACAACAAAGAAATTTTGCATCACAACAGTCCGAGGCATCCAAGAAATGAGACTCGTTCTGAGCTTGAAATATCTGGCATGGCTGCACAACATGCTTATCCATATTATATGCCAGGAATTGTTAATCATGTTATGATGCCTTCATTGGCACAAATGTATCAAAAGAATGTCCAGGACTTGCAGAATCATGCGGTTACATCGATGATTGCCCACTACAATCATGTTCCACAAGTCAGTCCTCATGGCACTGGTATGATGTCTTACCCATATTACCCATCAAGCATGTGCTTACAACCCGGTCAGATTCCTTCAGGTCATTCATGGCCATCCTTTGGAGGCTCAAGTTCAACCGAATCAAAATTAAGTAAAGTTGATAGGAGAGAGGCAGCGTTGATTAAATTCAGACAGAAAAGAAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCTGAAAGACGGCCTCGGGTGAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAATGGACAGCCTCCTTCCATTGAATATGATCAAGATGGTGAAGAAGAAGATGACCTGGGAGCTTGA 1662 0.4134 MESEGFDLNRGTSGGNNGKIGDDFVDRSKVRILLCDTDSNSSQEVFTLLLRCCYQVISVKSARQVIDALNAEGEHIDLILAEVGLPKKKGMKMLKYIARDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLSEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRNTIPETEMSVQQEQVSTIANAAAVEEPPDDHASECQLDVHGINDQRIAHFSSGPKKSELRIGVGESSAFFTYVKASMLKRNLEGIVHVDNNAAERLRMEVMHQACAQQGVSSDFEIRENGDTCESQSQEDLPSSNSIPDSLSIERSCTPPASTEASQQNRYNKEILHHNSPRHPRNETRSELEISGMAAQHAYPYYMPGIVNHVMMPSLAQMYQKNVQDLQNHAVTSMIAHYNHVPQVSPHGTGMMSYPYYPSSMCLQPGQIPSGHSWPSFGGSSSTESKLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGANVDLNGQPPSIEYDQDGEEEDDLGA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01712 553 Pfam CCT motif 482 524 IPR010402 GO:0005515
Trre5g01712 553 SUPERFAMILY CheY-like 26 155 IPR011006 -
Trre5g01712 553 MobiDBLite consensus disorder prediction 320 359 - -
Trre5g01712 553 Pfam Response regulator receiver domain 32 143 IPR001789 GO:0000160
Trre5g01712 553 ProSiteProfiles CCT domain profile. 482 524 IPR010402 GO:0005515
Trre5g01712 553 MobiDBLite consensus disorder prediction 313 372 - -
Trre5g01712 553 Gene3D - 30 246 - -
Trre5g01712 553 ProSiteProfiles Response regulatory domain profile. 31 149 IPR001789 GO:0000160
Trre5g01712 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 323 IPR045279 GO:0009736
Trre5g01712 553 SMART REC_2 30 145 IPR001789 GO:0000160
Trre5g01712 553 MobiDBLite consensus disorder prediction 527 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01712 Trre-Chr5 12516819 12521492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01712 19 542 Response Regulator Gene Family AT5G61380 49.591 3.53e-172 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre5g01712 Response_reg 1.3e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01712 K12127 - gmx:100799728 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01712 5 12516819 12521492 Trre5g01712 5 12516819 12521492 ECH