Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01705 ATGGAAAATGTTTCAGTTATGTGTAAGGAAGAAGATCAAATGGATTTTCCACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATTAGTCATTACCTTCTAAGAAAGGTAACTGACACAAACTTTTCTGCTAAAGCCATTGGAGAAGTTGATTTAAACAAATCTGAACCTTGGGATTTGCCATGGAAAGCAAAAATGGGTGAGAAAGAGTGGTATTTTTTTTGTGCAAGAGATAGAAAATATCCAACTGGTTTGAGGACTAATAGAGCAACTGAAGCTGGATATTGGAAAGCAACAGGAAAAGATAAGGAGATTTATAGAGGAAAATCTCTTGTTGGAATGAAAAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAGAAAACTAATTGGGTGATGCATGAATATAGACTTGATGGTAAATTGTCTGTTCATAATCTTCCTAAAACTGCTAAGAATGAGTGGGTGATTTGCAGGGTATATCAGAAGAGTTTATCAAGCAAAAAGACATGTTTTTCTTCTGGTATAATGAGGTTAAACTCTTTTGGAAATGAACTTGGTTCTTCTATTCTTCCACCACTCACAGAATCTTCACCTTATTCCATTGACAAAATCAAATCACCTTACGTGTCCTGCTTCTCCAATCCAATTGAAAGAAACCAAGTTGGAATCTTTGATACCTTTAGCAACAACCCTTTTGAGGATCATTCAAATCATTCAATTAATCTTCCAAAAAACACACTTTCTATTGGTTCATTTTACTCTAATCAAGAGGTTCAAGTCAAACCAAATTTGCTATTATCTGGTTCTGTTTATAACAATGGATCAAACTTTGAGAATCAACAGCATCTACCTGTTTCTACTGCACCAATTGATATATCTACCTTGTGGAATTATTAA 909 0.3465 MENVSVMCKEEDQMDFPPGFRFHPTDEELISHYLLRKVTDTNFSAKAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCARDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLDGKLSVHNLPKTAKNEWVICRVYQKSLSSKKTCFSSGIMRLNSFGNELGSSILPPLTESSPYSIDKIKSPYVSCFSNPIERNQVGIFDTFSNNPFEDHSNHSINLPKNTLSIGSFYSNQEVQVKPNLLLSGSVYNNGSNFENQQHLPVSTAPIDISTLWNY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01705 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 255 - -
Trre5g01705 302 FunFam NAC domain-containing protein 100-like 25 170 - -
Trre5g01705 302 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Trre5g01705 302 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Trre5g01705 302 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Trre5g01705 302 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01705 Trre-Chr5 12459184 12460586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01705 14 302 NAC Transcription Factor Family AT5G07680 57.321 9.30e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g01705 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01705 - - gmx:100170719 433.335