Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01703 ATGGAGCAAAAGTTGAACAAAGGACCATGGTCAAAACAAGAGGATGAAATATTAATTGAATATGTAAATAGATATGGATCGAAAAATTGGAATAATGTACCAAGATTCACTGGACTTCCTCGAGATGGTAGAAGCTGTCGTTTTAGATGGCTTAATCAACTTAATCCATGTTTGAAAAAGGGAAGATATAGTGAAGAAGAAAAACAAAAAATCCTTCAACTTCGTGATCAACTTAATTGTTCATGGGCCGAAATTGCTAAACAGATTCCTGGAAGAACAGATAATGAGGTAAAGAACATCTGGTATAGTAATGAGAGAAAGAAACATAAAATGGAGATGGAGAACGTCAAAGAAGAATGTCGGAAAAAGAAAAAGAAATTAAATCATTCGCCACTCAACGATGAAATCAAAAAACCACATGGTAATGAGTTGAATGACAATGGAGAAAGTAATCTTAGTGGTGTCATGAGCAACCAACAACAAGACATTTCTGGCACACATGAAAGGGAACTCATGAAAGATTCATTCCATATTCCAATTATGCAACCTTCAAATACACTGCTATGCAATGTGGCAAGTACTTCTATAAGCCAAAATTCTTCTCCAACATTCATTGATAGGGATGAAGCTTCTTTTGTGCCAATTGGAATGGTATCAAATTTGCCTCCATTGCTAGAAAGTGCAAATTTTGAATCTCCACTGCCTTCCTACACTTCAATGAGCAATAATTCTTTCCCAACAATCATTGATAGGGGTGAAGCTCCTTTTATGCCAAGTAACATGCTATCAGATTTGCCTCCATTGATAGAAATTGAATCTCCACTTCCTTCATACACCTATGAAAGCAATATCTCTTCCCCAACATTTATTGAAAGGGATGAAACTTCTTTTGCTTCTATGGACATGATATCAGAATATCTAGCTCTATTTCCACTTCCAGAAAGTATAGATTTTCAATCTCTTGATTCTCCACTGATTGATAAGTATCCTCCACTTCCACTCCGATCACCCGAGGAGATTCGACAAGAACAATTAGAACAGGATTATCCACCCAATAATGGTTTTTTGGTTGCTGAAGAAGATGGGAATAAGCCAATATCTTTGGAGAAAGATGAATCAAAAAATGAAGACTTAATAGATTTGTTTGATCCCAATAATGGTTTTTTGGTTGTTGAAGAAAATGGGAATAAGCCAATATCTTTGGAGAAAGATGAATCAAAAAATGAAGACTTAATAGATTTGATTGATAGTTTGGATTGGCTTGATGGTTATATTTTTTGA 1281 0.3513 MEQKLNKGPWSKQEDEILIEYVNRYGSKNWNNVPRFTGLPRDGRSCRFRWLNQLNPCLKKGRYSEEEKQKILQLRDQLNCSWAEIAKQIPGRTDNEVKNIWYSNERKKHKMEMENVKEECRKKKKKLNHSPLNDEIKKPHGNELNDNGESNLSGVMSNQQQDISGTHERELMKDSFHIPIMQPSNTLLCNVASTSISQNSSPTFIDRDEASFVPIGMVSNLPPLLESANFESPLPSYTSMSNNSFPTIIDRGEAPFMPSNMLSDLPPLIEIESPLPSYTYESNISSPTFIERDETSFASMDMISEYLALFPLPESIDFQSLDSPLIDKYPPLPLRSPEEIRQEQLEQDYPPNNGFLVAEEDGNKPISLEKDESKNEDLIDLFDPNNGFLVVEENGNKPISLEKDESKNEDLIDLIDSLDWLDGYIF 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01703 426 CDD SANT 9 52 IPR001005 -
Trre5g01703 426 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 311 - -
Trre5g01703 426 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Trre5g01703 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 109 IPR017930 -
Trre5g01703 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 58 IPR017930 -
Trre5g01703 426 Coils Coil 106 130 - -
Trre5g01703 426 CDD SANT 62 104 IPR001005 -
Trre5g01703 426 Pfam Myb-like DNA-binding domain 10 70 - -
Trre5g01703 426 Gene3D - 7 59 - -
Trre5g01703 426 SMART sant 6 56 IPR001005 -
Trre5g01703 426 SMART sant 59 107 IPR001005 -
Trre5g01703 426 SUPERFAMILY Homeodomain-like 5 101 IPR009057 -
Trre5g01703 426 ProSiteProfiles Myb-like domain profile. 2 54 IPR001005 -
Trre5g01703 426 Gene3D - 62 133 - -
Trre5g01703 426 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01703 Trre-Chr5 12448124 12450836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01703 2 108 MYB Transcription Factor Family AT3G13890 52.336 2.43e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g01703 Myb_DNA-bind_6 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01703 K09422 - tpra:123888557 370.163